hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00903/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1935  ( 738 res)   mph00903

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PWWP     PWWP domain                                     30.5    5.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PWWP       1/1     635   711 ..     1    87 []    30.5  5.4e-06

Alignments of top-scoring domains:
PWWP: domain 1 of 1, from 635 to 711: score 30.5, E = 5.4e-06
                   *->dfkpgDLVwAKmkGfpwWPAriisqketptsvrkklkrimTqeaksn
                       +  gD+VwAK+ GfpwWPAri+                    +k+n
   mKIAA1935   635    TICVGDIVWAKIYGFPWWPARILTITVS---------------RKDN 666  

                   lyk......VlFFgdhktrawvskkklkPlldqdidkfkkdekrKg<-*
                   ++  +++ ++ +F +++t + +  + l P l+ +  +f+k++k+     
   mKIAA1935   667 GLLarqearISWFASPTT-SSLALSQLSPFLENFQLRFNKKRKGLY    711  

//