hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp12062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1929  ( 668 res)   mbp12062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HR1      Protein kinase C-related kinase homology reg    88.3    9.4e-22   1
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      78.9    6.2e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HR1        1/1      49   121 ..     1    87 []    88.3  9.4e-22
PDZ        1/1     533   603 ..     1    80 []    78.9  6.2e-19

Alignments of top-scoring domains:
HR1: domain 1 of 1, from 49 to 121: score 88.3, E = 9.4e-22
                   *->lllerLrkkLevElkireGaEkllRltsdekLlllkketkevkrkak
                      +++ rL++++++El++r+GaE+l+R+ts+++          v++++ 
   mKIAA1929    49    SHRARLHQQISKELRMRTGAENLYRATSNTW----------VRETVA 85   

                   seaeeklvESnqklelLkqsLerLeelhqdsdpegesdte<-*
                   +e+++     n++l+lLk++L +L++++++++pege++t    
   mKIAA1929    86 LELSYV----NSNLQLLKEELAELSTSVDVDQPEGEGITI    121  

PDZ: domain 1 of 1, from 533 to 603: score 78.9, E = 6.2e-19
                   *->gglGfsivg..gifvssvvpGspAakaGrkslglLkvGDvIleVNGe
                      gg+Gf+++g+++++++ vvpG+ A+ aG      Lk+GD I++VNG 
   mKIAA1929   533    GGFGFTLRGdsPVLIAAVVPGGQAESAG------LKEGDYIVSVNG- 572  

                   tsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++ + + h+e+v  l++ g+    e v+L v+      
   mKIAA1929   573 QPCKWWKHLEVVTQLRSMGE----EGVSLQVVSLL    603  

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