hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp12062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1929  ( 668 res)   mbp12062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BRO1     BRO1-like domain                               276.1    4.6e-79   1
HR1      Hr1 repeat                                      89.2    8.4e-23   1
PDZ      PDZ domain (Also known as DHR or GLGF)          50.7    3.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HR1        1/1      49   121 ..     1    87 []    89.2  8.4e-23
BRO1       1/1     122   274 ..     1   172 []   276.1  4.6e-79
PDZ        1/1     525   600 ..     1    82 []    50.7  3.3e-11

Alignments of top-scoring domains:
HR1: domain 1 of 1, from 49 to 121: score 89.2, E = 8.4e-23
                   *->lllerLrkkLevElkireGaEkllRltsdekLlllkketkevkrkak
                      +++ rL++++++El++r+GaE+l+R+ts+++          v++++ 
   mKIAA1929    49    SHRARLHQQISKELRMRTGAENLYRATSNTW----------VRETVA 85   

                   seaeeklvESnqklelLkqsLerLeelhqdsdpegesdte<-*
                   +e+++     n++l+lLk++L +L++++++++pege++t    
   mKIAA1929    86 LELSYV----NSNLQLLKEELAELSTSVDVDQPEGEGITI    121  

BRO1: domain 1 of 1, from 122 to 274: score 276.1, E = 4.6e-79
                   *->efLsipLKkTsevDlvkpLtkyIsntYgsskcerpssyaedalqeLs
                      ++++++LK+T+e+D+++pL+++Is+++g    e+ +s++ +++qeL+
   mKIAA1929   122    PMIPLGLKETKELDWATPLKELISEHFG----EDGTSFE-TEIQELE 163  

                   kLRnqaisvgrpldkseagrldvllrYYqqLcaLenkFpssedqHigveF
                   +LR+++  ++  ++++eag ld+l +YY+qLc+L+ +F+s++++ +g+ F
   mKIAA1929   164 DLRQAT--RT--PSRDEAG-LDLLAAYYSQLCFLDARFFSPSRS-PGLLF 207  

                   tWyDafdkgslFgssvklsqssLaFEKAcVLFNigalySqiAasqinrtt
                   +WyD+++       +v+++q+ LaFEK +VLFNigal++qi+a+q ++++
   mKIAA1929   208 HWYDSLT-------GVPAQQRALAFEKGSVLFNIGALHTQIGARQ-DCSC 249  

                   ddglKqAckyFQqAAGaFahlrdnf<-*
                   ++g+++A+++FQ+AAGaF++lr+nf   
   mKIAA1929   250 TEGTNHAAEAFQRAAGAFRLLRENF    274  

PDZ: domain 1 of 1, from 525 to 600: score 50.7, E = 3.3e-11
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                       v++ +  + gg+Gf+++g s   + ++ v+pG g Ae +G LkeGD
   mKIAA1929   525    PVHMTR--GEGGFGFTLRGDSP--VLIAAVVPG-GQAESAG-LKEGD 565  

                   qIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                    I+svNGq+   + h+++v +l++ g++ v+L +    
   mKIAA1929   566 YIVSVNGQPCKWWKHLEVVTQLRSMGEEGVSLQVV    600  

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