hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid09080/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1926  ( 400 res)   mid09080

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LINK     Link (Hyaluronan-binding)                      289.9    1.9e-82   2
IG       Immunoglobulin                                  36.8      3e-06   1
IGc2     Immunoglobulin C-2 Type                         27.9     0.0014   1
IGv      Immunoglobulin V-Type                           27.6     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGv        1/1      64   146 ..     1    76 []    27.6   0.0017
IGc2       1/1      60   151 ..     1    56 []    27.9   0.0014
IG         1/1      54   162 ..     1    58 []    36.8    3e-06
LINK       1/2     162   266 ..     1   107 []   160.7  1.5e-43
LINK       2/2     270   363 ..     1   107 []   136.1  3.7e-36

Alignments of top-scoring domains:
IGv: domain 1 of 1, from 64 to 146: score 27.6, E = 0.0017
                   *->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy....
                      ++ L+C+++     +++++  + W +     +       +++  +++
   mKIAA1926    64    TIVLPCRYHYEAAahghdgvRLKWTKVVD--P--LAFADVFVAlgpq 106  

                   .....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                   ++  + y+gR ++  d     + +d+sL+++n++  D g+Y C++   
   mKIAA1926   107 hrafgPYRGRAELQND-----GPGDASLVLRNVTLQDYGRYECEV    146  

IGc2: domain 1 of 1, from 60 to 151: score 27.9, E = 0.0014
                   *->leGqsVtLtC......pasgdpvpnItWlk.gkplp...........
                      + G++++L+C+ + +  a g ++   +W+k   pl+  +     +++
   mKIAA1926    60    HRGGTIVLPCryhyeaAAHGHDGVRLKWTKvVDPLAfadvfvalgpq 106  

                   ..................sgstLtiknvsleDsGlYtCvArNsvg<-*
                   ++  ++ +++ + +++++++ +L ++nv+l D G+Y+C+++N+     
   mKIAA1926   107 hrafgpyrgraelqndgpGDASLVLRNVTLQDYGRYECEVTNELE    151  

IG: domain 1 of 1, from 54 to 162: score 36.8, E = 3e-06
                   *->pp.vtvkeGesvtLtC.as...........titWy............
                      p++v+  +G++++L+C+++     +++++ +++W++  ++    +  
   mKIAA1926    54    PGqVVSHRGGTIVLPCrYHyeaaahghdgvRLKWTkvvdplafadvf 100  

                   ............................LtI.nvtpeDsesgGtYtCaat
                      +++++  ++ +++   +++++++ +L+++nvt++D    G Y C++t
   mKIAA1926   101 valgpqhrafgpyrgraelqndgpgdasLVLrNVTLQDY---GRYECEVT 147  

                   ..sgsasseqgttLtVl<-*
                   +   ++ +   ++L  +   
   mKIAA1926   148 neLEDDVG--MVKLDLE    162  

LINK: domain 1 of 2, from 162 to 266: score 160.7, E = 1.5e-43
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                      +G+VF++ +r Gryk tF EA++aC +q++ LA+++QL+aAw++ G+
   mKIAA1926   162    EGVVFPYHPRGGRYKMTFVEAQRACAEQDGILASAEQLHAAWRD-GL 207  

                   dqCdaGWLaDGsVrYPIvtPrprCGg......DsdglpGVRtVYlfaNQy
                   d+C+aGWL DGsV+YP++++r++CGg+++++ + +++ GVR+       y
   mKIAA1926   208 DWCNAGWLRDGSVQYPVSHAREPCGGtgstgaGGGTNGGVRN-------Y 250  

                   GfpdpdserYDAYCFr<-*
                   G++ + +erYDA+CF+   
   mKIAA1926   251 GYRHNAEERYDAFCFT    266  

LINK: domain 2 of 2, from 270 to 363: score 136.1, E = 3.7e-36
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                       G+VF+l +    +   +a+A +aC a+GA+ A+vgQL+aAwk+  +
   mKIAA1926   270    PGRVFFLKP---LRPVALAGAVRACAARGATVAKVGQLFAAWKLQLL 313  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   d+C+aGWLaDGs rYPIv+Pr+rCGg   ++pGVR+       +Gfpd  
   mKIAA1926   314 DRCTAGWLADGSARYPIVNPRTRCGG---PRPGVRS-------LGFPDAS 353  

                   serYDAYCFr<-*
                    +++++YC+r   
   mKIAA1926   354 RRLFGVYCYR    363  

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