hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid09080/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1926  ( 400 res)   mid09080

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Xlink    Extracellular link domain                      295.0    9.2e-85   2
V-set    Immunoglobulin V-set domain                     31.0    2.8e-05   1
I-set    Immunoglobulin I-set domain                    -20.7       0.57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
I-set      1/1      48   162 ..     1    97 []   -20.7     0.57
V-set      1/1      47   162 ..     1   130 []    31.0  2.8e-05
Xlink      1/2     163   265 ..     1   104 []   168.5  1.1e-46
Xlink      2/2     271   362 ..     1   104 []   134.2  2.4e-36

Alignments of top-scoring domains:
I-set: domain 1 of 1, from 48 to 162: score -20.7, E = 0.57
                   *->PkFtqkpkdveVqeGesarfeCk......VtGtPePtVsWfKdGqpl
                       +  + p  v+   G ++++ C+ + +  + G+      W+K   pl
   mKIAA1926    48    VVVQTAPGQVVSHRGGTIVLPCRyhyeaaAHGHDGVRLKWTKVVDPL 94   

                   ssvllpsdrfkvtydg..................GsgtytLtIsnvqpdD
                              +++ g++++  ++ +++ + +++G g+++L+ +nv+  D
   mKIAA1926    95 AF------ADVFVALGpqhrafgpyrgraelqndGPGDASLVLRNVTLQD 138  

                   sGkYtCvAtNsaGeaeasaeLtVq<-*
                    G Y C +tN+   +   ++L  +   
   mKIAA1926   139 YGRYECEVTNELEDDVGMVKLDLE    162  

V-set: domain 1 of 1, from 47 to 162: score 31.0, E = 2.8e-05
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                      +++v++  p+           v+  +Gg++ LpC y+         +
   mKIAA1926    47    SVVVQT-APG----------QVVSHRGGTIVLPCRYH---YEAAAHG 79   

                   gtg.svyWyrqqppGekpeliii.syytyysysegngtvserfkgrvrfs
                   ++g ++ W +            +  +   ++  +++++  ++++gr +++
   mKIAA1926    80 HDGvRLKWTK-VVD--------PlAFADVFVALGPQHRAFGPYRGRAELQ 120  

                   gnpskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-*
                   ++++ gd+sL ++n++l D G Y C  +++ +++ g ++L  +   
   mKIAA1926   121 NDGP-GDASLVLRNVTLQDYGRYECEvtneleddVGMVKLDLE    162  

Xlink: domain 1 of 2, from 163 to 265: score 168.5, E = 1.1e-46
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq
                      G+VF+y +++gRYk tF EAq+aC++q++ +A+ +QL AAw++G+d+
   mKIAA1926   163    GVVFPYHPRGGRYKMTFVEAQRACAEQDGILASAEQLHAAWRDGLDW 209  

                   CdAGWLADgsVRYPIvkPRenCgGdkdgfp......GVRtyYlfpNQTGf
                   C+AGWL DgsV+YP++++Re+CgG+  + +++++++GVR+y       G+
   mKIAA1926   210 CNAGWLRDGSVQYPVSHAREPCGGTGSTGAgggtngGVRNY-------GY 252  

                   pddpssrYDvYCF<-*
                   + +  +rYD++CF   
   mKIAA1926   253 RHNAEERYDAFCF    265  

Xlink: domain 2 of 2, from 271 to 362: score 134.2, E = 2.4e-36
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkg.Gfd
                      G+VF++ +      +  + A++aC+++gA+ A++gQL+AAwk + +d
   mKIAA1926   271    GRVFFLKPLR---PVALAGAVRACAARGATVAKVGQLFAAWKLqLLD 314  

                   qCdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddps
                   +C AGWLADgs RYPIv+PR++CgG     pGVR +       Gfpd + 
   mKIAA1926   315 RCTAGWLADGSARYPIVNPRTRCGGPR---PGVRSL-------GFPDASR 354  

                   srYDvYCF<-*
                    +++vYC+   
   mKIAA1926   355 RLFGVYCY    362  

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