hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00636/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1924 ( 1782 res) mpf00636 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 282.7 2.7e-80 21 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/21 368 409 .. 1 46 [] 10.6 10 WD40 2/21 412 455 .. 1 46 [] 12.3 5.5 WD40 3/21 462 502 .. 1 46 [] 5.9 58 WD40 4/21 577 615 .. 1 46 [] 8.8 20 WD40 5/21 618 656 .. 1 46 [] 17.0 1 WD40 6/21 658 698 .. 1 46 [] 27.7 0.0016 WD40 7/21 701 740 .. 1 46 [] 11.6 7.2 WD40 8/21 743 782 .. 1 46 [] 17.6 0.82 WD40 9/21 840 883 .. 1 46 [] 9.0 18 WD40 10/21 886 925 .. 1 46 [] 17.0 1 WD40 11/21 930 967 .. 1 46 [] 23.6 0.027 WD40 12/21 1180 1224 .. 1 46 [] 25.2 0.0092 WD40 13/21 1227 1268 .. 1 46 [] 20.6 0.22 WD40 14/21 1274 1309 .. 1 46 [] 1.2 3.2e+02 WD40 15/21 1312 1359 .. 1 46 [] 12.4 5.3 WD40 16/21 1362 1399 .. 1 46 [] 9.2 17 WD40 17/21 1458 1497 .. 1 46 [] 37.7 1.6e-06 WD40 18/21 1500 1545 .. 1 46 [] 17.0 1 WD40 19/21 1549 1587 .. 1 46 [] 18.8 0.52 WD40 20/21 1590 1639 .. 1 46 [] 4.2 1.1e+02 WD40 21/21 1740 1778 .. 1 46 [] 20.0 0.33 Alignments of top-scoring domains: WD40: domain 1 of 21, from 368 to 409: score 10.6, E = 10 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs...Dgtir ++ + r + gHt+ V+++a + ++ +llas+ ++ + +r mKIAA1924 368 DtGQQRFFLGHTD--KVSALALNGSD------TLLASAQvqpPSMVR 406 lWd<-* lWd mKIAA1924 407 LWD 409 WD40: domain 2 of 21, from 412 to 455: score 12.3, E = 5.5 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt.... t+++l+ ++ + ++s++fs +g ll+ ++D+++++ mKIAA1924 412 TgSCLSLFRSPLH--TICSLSFSGSG------ALLCGVGkDRHgrtv 450 irlWd<-* + W+ mKIAA1924 451 VVAWS 455 WD40: domain 3 of 21, from 462 to 502: score 5.9, E = 58 *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgsDgtirlW ++++ k Ht+ + + vaf + +++as++ g++rlW mKIAA1924 462 GgEVVVLAKVHTDFdIRAFQVAFFDE-------TRMASCGRGSVRLW 501 d<-* mKIAA1924 502 R 502 WD40: domain 4 of 21, from 577 to 615: score 8.8, E = 20 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + ++ +g +++s+++s a+gs+Dg +rlW mKIAA1924 577 PlAEKQNFSVGSG-IAISSLSVSTA--------TCAVGSeDGYLRLW 614 d<-* mKIAA1924 615 P 615 WD40: domain 5 of 21, from 618 to 656: score 17.0, E = 1 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++l + + H+g pV+sv+fspdg +++s + g++ + mKIAA1924 618 FsSVLLEAE-HDG--PVSSVSFSPDG------LRVLSTTtSGHLGFL 655 d<-* d mKIAA1924 656 D 656 WD40: domain 6 of 21, from 658 to 698: score 27.7, E = 0.0016 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl +++ +l + H + pV++++ p+ ++a+ s D+t+r+ mKIAA1924 658 PsREYTVLArSHMA--PVLALSTEPNR------GQMATVSlDHTVRI 696 Wd<-* Wd mKIAA1924 697 WD 698 WD40: domain 7 of 21, from 701 to 740: score 11.6, E = 7.2 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t ++l+ ++ ++ ++vaf+p+ +++g + g +r + mKIAA1924 701 TlQQLYDFSSSED--TPCAVAFHPTM------PNFFCGFsSGAVRSF 739 d<-* + mKIAA1924 740 S 740 WD40: domain 8 of 21, from 743 to 782: score 17.6, E = 0.82 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ +l + + H+g ++ts+ + dg ++l+s+++ g++ + mKIAA1924 743 SsGVLVEHTRHRG--AITSLVITLDG------RFLFSSCsQGSLVQY 781 d<-* + mKIAA1924 782 S 782 WD40: domain 9 of 21, from 840 to 883: score 9.0, E = 18 *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti + ++tl+ + H + + +++fsp + + +l+++ + +++ mKIAA1924 840 LrVDVSTLNlasNHLD--WAVAICFSPGN-----SGHLLVSTsSNKV 879 rlWd<-* + d mKIAA1924 880 VVLD 883 WD40: domain 10 of 21, from 886 to 925: score 17.0, E = 1 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgsDgtirlW ++ lr+l++ + +++s+a s d +ll+++ D+ti +W mKIAA1924 886 SgHTLRELSsVRSR--ACCSLALSEDA------HLLLAATDRTITVW 924 d<-* d mKIAA1924 925 D 925 [output cut off at A = 10 top alignments] //