hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj01347/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1923 ( 1022 res) mfj01347 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 100.3 2.2e-25 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/5 70 120 .. 1 46 [] 2.0 2.4e+02 WD40 2/5 123 163 .. 1 46 [] 34.3 1.6e-05 WD40 3/5 167 205 .. 1 46 [] 17.7 0.79 WD40 4/5 209 249 .. 1 46 [] 39.5 4.5e-07 WD40 5/5 300 344 .. 1 46 [] 15.9 1.5 Alignments of top-scoring domains: WD40: domain 1 of 5, from 70 to 120: score 2.0, E = 2.4e+02 *->t.kllrtlkgHtge.....spVtsvafspdggssdspnllasgs.Dg +l + ++gH++ +++++ ++ +v+++p++ + +++a++s+ + mKIAA1923 70 IvNLDAPFEGHRKIsrqskWDIGAVQWNPHD---SFAHYFAASSnQR 113 t.irlWd<-* +++ W+ mKIAA1923 114 VdLYKWK 120 WD40: domain 2 of 5, from 123 to 163: score 34.3, E = 1.6e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++++ tl+gHt ++++++ p+ll+++s D i++W mKIAA1923 123 SgEVGTTLQGHTR--VISDLDWAVFE-----PDLLVTSSvDTYIYIW 162 d<-* d mKIAA1923 163 D 163 WD40: domain 3 of 5, from 167 to 205: score 17.7, E = 0.79 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd t+k++ l+ + + + v+++ + n+la++ Dg +r+Wd mKIAA1923 167 TrKPTVALS-AVA--GASQVKWNKKN-----ANYLATSHDGDVRIWD 205 <-* mKIAA1923 - - WD40: domain 4 of 5, from 209 to 249: score 39.5, E = 4.5e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ + l +H + +++++++pd+ ++++a++s+D+++++W mKIAA1923 209 PsTAVEYLAAHLS--KIHGLDWHPDS-----EHIFATSSqDNSVKFW 248 d<-* d mKIAA1923 249 D 249 WD40: domain 5 of 5, from 300 to 344: score 15.9, E = 1.5 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +++t+ gH++ V+ ++ ++++++ +l++ s+D t+r+W mKIAA1923 300 LnAPVHTFVGHDD--VVLEFQWRRQ-KEGSKDYQLVTWSrDQTLRMW 343 d<-* mKIAA1923 344 R 344 //