hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01347/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1923  ( 1022 res)   mfj01347

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       100.3    3.9e-26   4
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)            2.1       0.61   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     125   163 ..     1    38 []    34.2    3e-06
WD40       2/4     169   205 ..     1    38 []    14.4      2.8
WD40       3/4     211   249 ..     1    38 []    36.0  8.9e-07
WD40       4/4     302   344 ..     1    38 []    19.8    0.067
zf-C3HC4   1/1     972  1012 ..     1    50 []     2.1     0.61

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 125 to 163: score 34.2, E = 3e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e+ ++l+gHt  +++++++  ++ ll+++S D  i+iWd   
   mKIAA1923   125    EVGTTLqGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWD    163  

WD40: domain 2 of 4, from 169 to 205: score 14.4, E = 2.8
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++  l++  ++ + v+++  + ++la++ + g ++iWd   
   mKIAA1923   169    KPTVALsAV-AGASQVKWNKKNANYLATSHD-GDVRIWD    205  

WD40: domain 3 of 4, from 211 to 249: score 36.0, E = 8.9e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + +  l +H s +  ++++pds +++a++S D+++k Wd   
   mKIAA1923   211    TAVEYLaAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWD    249  

WD40: domain 4 of 4, from 302 to 344: score 19.8, E = 0.067
                   *->eclavl.gHtspVtcvafspd....sgpllasgSrDgtikiWd<-*
                       +++++ gH + V    +   ++++   +l++ SrD t+++W    
   mKIAA1923   302    APVHTFvGHDDVVLEFQWRRQkegsKDYQLVTWSRDQTLRMWR    344  

zf-C3HC4: domain 1 of 1, from 972 to 1012: score 2.1, E = 0.61
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+IC+      s    + l CgH       + s +++w++   ++ C
   mKIAA1923   972    CAICHVAVRGSS---NFCLTCGHG-----GHTSHMMEWFR-TQEV-C 1008 

                   pl.C<-*
                   p +C   
   mKIAA1923  1009 PTgC    1012 

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