hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02133/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1921  ( 1004 res)   mbg02133

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        89.6    3.7e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     458   560 ..     1   114 []    89.6  3.7e-22

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 458 to 560: score 89.6, E = 3.7e-22
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +D+++vv+g         ++f++  H  vLa+c   S yFk+l   +
   mKIAA1921   458    TDLKIVVEG---------REFEV--HQNVLASC---SLYFKDLIQRs 490  

                   .............ieldDeallievspeaFralLnflYt.kldlpeedve
                    ++++++++++ +  l+        +++++++lL+f Yt++l ++     
   mKIAA1921   491 vqdssqssrekleLVLSN------LQADVLELLLEFVYTgSLVIDSA--- 531  

                   nveelLelAdfldSYGqip.lvelCeefllknl<-*
                   n++ lLe+A+++    q  +  ++C +fl+k+l   
   mKIAA1921   532 NAKTLLEAASKF----QFHtFCKVCVSFLEKQL    560  

//