hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg02133/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1921 ( 1004 res) mbg02133 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 192.7 6e-54 6 BACK BTB And C-terminal Kelch 165.7 8e-46 1 Kelch_2 Kelch motif 106.6 4.8e-28 5 BTB BTB/POZ domain 99.2 7.9e-26 1 Extensin_2 Extensin-like region -134.9 0.32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Extensin_2 1/1 154 443 .. 1 385 [] -134.9 0.32 BTB 1/1 448 560 .. 1 135 [] 99.2 7.9e-26 BACK 1/1 565 667 .. 1 103 [] 165.7 8e-46 Kelch_1 1/6 702 751 .. 1 45 [] 18.6 0.15 Kelch_2 1/5 702 751 .. 1 54 [] 18.9 0.12 Kelch_1 2/6 754 799 .. 1 45 [] 29.7 6.7e-05 Kelch_2 2/5 754 799 .. 1 54 [] 8.2 21 Kelch_1 3/6 801 846 .. 1 45 [] 53.4 4.9e-12 Kelch_2 3/5 801 846 .. 1 54 [] 34.5 2.4e-06 Kelch_1 4/6 848 894 .. 1 45 [] 38.4 1.6e-07 Kelch_2 4/5 848 894 .. 1 54 [] 24.4 0.0027 Kelch_1 5/6 896 937 .. 1 45 [] 6.0 5.5 Kelch_1 6/6 939 986 .. 1 45 [] 52.8 7.5e-12 Kelch_2 5/5 939 986 .. 1 54 [] 21.5 0.02 Alignments of top-scoring domains: Extensin_2: domain 1 of 1, from 154 to 443: score -134.9, E = 0.32 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy + + + s+++ s s s P +P p v+ mKIAA1921 154 GTHGATSVCSVTSGAGGSTASSLSARPGL----------LPLP--VV 188 kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv S P P P P +S + mKIAA1921 189 PSRLPT-----------P---ATAPAPC------------TTGSSEAITS 212 ykYkSPPPPthsppPpyvykSPPPPpk...............kyvykSpP + +S t k P + ++++++ +++ + ++++v +S P mKIAA1921 213 LVVSSASAAT--------TKAPGISKAdnqsqglttsirwgqTPVNQSTP 254 pptPvYkYkSPPPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPpp t pP +k+ + S P + P + mKIAA1921 255 WDT---------------DEPP--SKQ----MRESDNPGTG------PWV 277 vkkyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkk p+ Y PP+ + ++ + + + + P P+ mKIAA1921 278 T---TVAAGNQPSLITHSYGVTQPPT---FSPAVNVQAPVIGVTPSLPP- 320 sYkspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPP + p P ip Y+ P PP+++ s+ + P mKIAA1921 321 -----------HVGPQLPLIPGHYSLPQPPSQPLSSVVVNM-------PA 352 tyvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpippiksssppPvy Y Sp p + p+ s P PtPv + p +ppP++ mKIAA1921 353 QALYASPQPLAVSTLPGVGQVSRPGPTPVGNGHMAGP------LLPPPPP 396 vYkSpPppvysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPP S+ p+ P PP+ + ++ Y ++ P mKIAA1921 397 AQPSAALPSSVPATN------GPPTTDSAHGLQMLRTIGVGKYEFTDPGH 440 phh<-* p mKIAA1921 441 PKE 443 BTB: domain 1 of 1, from 448 to 560: score 99.2, E = 7.9e-26 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln++r+ + ++D +vv+ g++f +H vLa+cS YFk+l mKIAA1921 448 LNQQRRAKAFTDLKIVVE--------GREFEVHQNVLASCSLYFKDL 486 Ftgqfkesiteeessvs....seieledvspedfealLefiYtgelsitq ++ss+s++++ e+ l++ +++++e+lLef Ytg l i+ mKIAA1921 487 IQRS------VQDSSQSsrekLELVLSNLQADVLELLLEFVYTGSLVID- 529 dqksPssckseenvedlLalAadllqipslvdkCeefliksl<-* +n+ lL++A +++q + ++C +fl k+l mKIAA1921 530 ----------SANAKTLLEAA-SKFQFHTFCKVCVSFLEKQL 560 BACK: domain 1 of 1, from 565 to 667: score 165.7, E = 8e-46 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLg++ +A+a++c+eL+++A++f+lq F+eVa++eE l++sk+++i mKIAA1921 565 CLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIA 611 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky ++s+D+Ln++ Ee V+e v++W+k+d+++R ++++eLL++VRLp+++p+y mKIAA1921 612 YVSNDSLNTKAEELVYETVIKWIKKDPATRAQYAAELLAAVRLPFIHPSY 661 Llevve<-* Ll+vv mKIAA1921 662 LLNVVD 667 Kelch_1: domain 1 of 6, from 702 to 751: score 18.6, E = 0.15 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp + + ++ + +i +GG+ + +++sl v +++p +n+W +l+ mKIAA1921 702 RTRPRLSAGVAEVIVLVGGRQMvgmtqRSLVAVTCWNPQNNKWYPLA 748 smp<-* s+p mKIAA1921 749 SLP 751 Kelch_2: domain 1 of 5, from 702 to 751: score 18.9, E = 0.12 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ p +s+ + + +++vGG+ g+ s+ + +++p+ n+W mKIAA1921 702 RTRPRLSAGVAEVIVLVGGR----QMVGMTQRSLVAVTCWNPQNNKW 744 eklpalp<-* +l++lp mKIAA1921 745 YPLASLP 751 Kelch_1: domain 2 of 6, from 754 to 799: score 29.7, E = 6.7e-05 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< R +++vv+ ++ iY GG+ +++ l +v++Y + W ++ m+ mKIAA1921 754 DREFFSVVSAGDNIYLSGGMESgVTLADVWCYMSLLDNWNLVSRMT 799 -* mKIAA1921 - - Kelch_2: domain 2 of 5, from 754 to 799: score 8.2, E = 21 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++v+ g+ +y++GG+ + + + d++++ W mKIAA1921 754 DREFFSVVSAGDNIYLSGGM--------ESGVTLADVWCYMSLLDNW 792 eklpalp<-* ++++ mKIAA1921 793 NLVSRMT 799 Kelch_1: domain 3 of 6, from 801 to 846: score 53.4, E = 4.9e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR+++ + v+dgkiY GG ++ ve+YD+ tn+W+ ++++p mKIAA1921 801 PRCRHNSLVYDGKIYTLGGLGVaGNVDHVERYDTITNQWEAVAPLP 846 -* mKIAA1921 - - Kelch_2: domain 3 of 5, from 801 to 846: score 34.5, E = 2.4e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++h s v++gk+y GG + + +++ ++d+ tn+W mKIAA1921 801 PRCRHNSLVYDGKIYTLGGL--------GVAGNVDHVERYDTITNQW 839 eklpalp<-* e +++lp mKIAA1921 840 EAVAPLP 846 Kelch_1: domain 4 of 6, from 848 to 894: score 38.4, E = 1.6e-07 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp + ++a+++v++gkiYv+GG++ +++ +Y p tntW+++ s++ mKIAA1921 848 AVHSAAATVCGGKIYVFGGVNEagRAAGVLQSYVPQTNTWSFIESPM 894 <-* mKIAA1921 - - Kelch_2: domain 4 of 5, from 848 to 894: score 24.4, E = 0.0027 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ a++v+ggk+yv+GG+ + + + +l+ + p+tn+W mKIAA1921 848 AVHSAAATVCGGKIYVFGGV-------NEAGRAAGVLQSYVPQTNTW 887 eklpalp<-* + + ++ mKIAA1921 888 SFIESPM 894 Kelch_1: domain 5 of 6, from 896 to 937: score 6.0, E = 5.5 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- +a +v+l+g +++ GG + + +YDpe++ + +p+m+ mKIAA1921 896 DNKYAPAVTLNGFVFILGG---AYARATTIYDPEKGNIKAGPNMN 937 * mKIAA1921 - - Kelch_1: domain 6 of 6, from 939 to 986: score 52.8, E = 7.5e-12 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R ++++vvldgkiY++GG ++++ +l + e+Y p+tntWt lp m mKIAA1921 939 SRQFCSAVVLDGKIYATGGIVSsegPALGNMEAYEPTTNTWTLLPHM 985 p<-* p mKIAA1921 986 P 986 Kelch_2: domain 5 of 5, from 939 to 986: score 21.5, E = 0.02 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r +++vv++gk+y GG+ ++++ + + p tn+W mKIAA1921 939 SRQFCSAVVLDGKIYATGGI------VSSEGPALGNMEAYEPTTNTW 979 eklpalp<-* + lp +p mKIAA1921 980 TLLPHMP 986 //