hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08812/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1916  ( 588 res)   mbg08812

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    73.6    2.4e-17   3
LRRCT    Leucine rich repeat C-terminal domain           28.2     0.0011   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_TYP    1/3     127   150 ..     1    24 []    25.3   0.0084
LRR_TYP    2/3     151   174 ..     1    24 []    22.6    0.057
LRR_TYP    3/3     175   198 ..     1    24 []    28.9  0.00072
LRRCT      1/1     210   259 ..     1    55 []    28.2   0.0011

Alignments of top-scoring domains:
LRR_TYP: domain 1 of 3, from 127 to 150: score 25.3, E = 0.0084
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp+L+ L L++N +t + ++aF+g   
   mKIAA1916   127    LPSLQLLLLNSNSFTVIRDDAFAG    150  

LRR_TYP: domain 2 of 3, from 151 to 174: score 22.6, E = 0.057
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L+ L  ++N+++++ ++aF+g   
   mKIAA1916   151    LFHLEYLFIEGNKIETISRNAFRG    174  

LRR_TYP: domain 3 of 3, from 175 to 198: score 28.9, E = 0.00072
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L++L+L nN++++LP+++F++   
   mKIAA1916   175    LRDLTHLSLANNHIKALPRDVFSD    198  

LRRCT: domain 1 of 1, from 210 to 259: score 28.2, E = 0.0011
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      N f+CDC  +wL +wl+  +n+ ++    +++C +P++++ ++l ++
   mKIAA1916   210    NKFECDCKAKWLYLWLKM-TNSTVS----DVLCIGPPEYQEKKLNEV 251  

                   lpsefsCp<-*
                   +  + +C+   
   mKIAA1916   252 TSFDYECT    259  

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