hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mib/mib23081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1915  ( 745 res)   mib23081

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    59.1    5.8e-13   1
JAB_MPN  JAB/MPN domain                                  29.9    0.00035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SANT       1/1      40    88 ..     1    53 []    59.1  5.8e-13
JAB_MPN    1/1     495   617 ..     1   156 []    29.9  0.00035

Alignments of top-scoring domains:
SANT: domain 1 of 1, from 40 to 88: score 59.1, E = 5.8e-13
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                      +  +Wt eE el++++++k+G    ++W+kIa  l +Rt+ q+++++
   mKIAA1915    40    HSVKWTVEEKELFEQGLAKFG----RRWTKIATLLKSRTVLQVKSYA 82   

                   rnllkp<-*
                   r+++k    
   mKIAA1915    83 RQYFKN    88   

JAB_MPN: domain 1 of 1, from 495 to 617: score 29.9, E = 0.00035
                   *->kvkvhplvllkilkhaeregpeevcGvLlGksnkDdkdvdsirvtns
                      kv    l+++++ +h    + +ev+G+L G + +         v ++
   mKIAA1915   495    KVAAEALLIMNLHAH---VSMAEVIGLLGGRYSE------ADKVLEV 532  

                   falpCWdfepnesnddvvnaqeydedyshlmdeelrfvlykkvekdleiV
                    a     ++ n   ++     + ++d+  +  +++       + ++++++
   mKIAA1915   533 CAA----EPCNSLSTGL----QCEMDPVSQTQASE-----TLALRGYSVI 569  

                   GWyHShpdegpypsevDvathesyqapieivvvlgfkkvdpirsfsgrls
                   GWyHShp+++p ps  D+ t+++yq++  +  ++    + +i+s      
   mKIAA1915   570 GWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKF---IGMIVSP----- 611  

                   lgafrltea<-*
                      +  ++    
   mKIAA1915   612 ---YNRSNP    617  

//