hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib23081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1915  ( 745 res)   mib23081

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Myb_DNA-binding Myb-like DNA-binding domain              53.0    6.7e-12   1
Mov34           Mov34/MPN/PAD-1 family                   51.8    1.5e-11   1
SWIRM           SWIRM domain                             44.8    1.9e-09   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Myb_DNA-binding   1/1      41    86 ..     1    65 []    53.0  6.7e-12
SWIRM             1/1     289   378 ..     1    95 []    44.8  1.9e-09
Mov34             1/1     489   599 ..     1   120 []    51.8  1.5e-11

Alignments of top-scoring domains:
Myb_DNA-binding: domain 1 of 1, from 41 to 86: score 53.0, E = 6.7e-12
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      + +Wt eE+el++++++k+G +           W kIa +l+     
   mKIAA1915    41    SVKWTVEEKELFEQGLAKFGRR-----------WTKIATLLK----- 71   

                   nvlgrtaeqcklryykyk<-*
                      +rt+ q+k++ ++y+   
   mKIAA1915    72 ---SRTVLQVKSYARQYF    86   

SWIRM: domain 1 of 1, from 289 to 378: score 44.8, E = 1.9e-09
                   *->iaeasyaawldlsaltpiEllsepEfflgktvsgsktpevYLviRns
                      ++ ++ +  +d + + + E++  pEff+g+++   ktpe YL iRn 
   mKIAA1915   289    LKPPEQEVEIDRNVIQEEEKQAIPEFFEGRQT---KTPERYLKIRNY 332  

                   ilslwrlnptryltktdarrnlagkfnsDvnlvsrvydFLerwGyINy<-
                   il++w++ + +yl kt +r  l+     Dvn + r++ +Le  G IN+  
   mKIAA1915   333 ILDQWEICKPKYLNKTSVRPGLKNCG--DVNCIGRIHTYLELIGAINF   378  

                   *
                    
   mKIAA1915     -   -    

Mov34: domain 1 of 1, from 489 to 599: score 51.8, E = 1.5e-11
                   *->ssvrtvkihplvllkildhaerggpskeevmGlLlGklegdgrviev
                      + + +vk+ +++ll +  ha  +  +   v+GlL G+ ++ + v+ev
   mKIAA1915   489    QEPFQVKVAAEALLIMNLHAHVSMAE---VIGLLGGRYSEADKVLEV 532  

                   tnvFalpqeeteddvdaveldqeymekmlemlkkvngrgeevVGWYHSHP
                     + +     t  +++++ + q   ++ ++++     rg++v+GWYHSHP
   mKIAA1915   533 CAAEPCNSLSTGLQCEMDPVSQT--QASETLAL----RGYSVIGWYHSHP 576  

                   glgcwlSevDvhtqelyqryipe<-*
                    +++ +S  D++tq++yq y+ +   
   mKIAA1915   577 AFDPNPSLRDIDTQAKYQSYFSR    599  

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