hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg21737/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1910 ( 760 res) mbg21737 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 118.7 6.5e-31 11 LRRCT Leucine rich repeat C-terminal domain 54.8 1.1e-11 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_TYP 1/11 145 168 .. 1 24 [] 3.4 1.6e+02 LRR_TYP 2/11 169 192 .. 1 24 [] 11.6 16 LRR_TYP 3/11 193 216 .. 1 24 [] 15.5 5.4 LRR_TYP 4/11 217 240 .. 1 24 [] 26.7 0.0033 LRR_TYP 5/11 244 264 .. 1 24 [] 2.2 2.2e+02 LRRCT 1/2 276 326 .. 1 55 [] 31.9 8.5e-05 LRR_TYP 6/11 438 461 .. 1 24 [] 10.5 22 LRR_TYP 7/11 462 485 .. 1 24 [] 11.3 17 LRR_TYP 8/11 486 509 .. 1 24 [] 9.2 31 LRR_TYP 9/11 510 533 .. 1 24 [] 19.2 0.58 LRR_TYP 10/11 534 557 .. 1 24 [] 32.2 7.3e-05 LRR_TYP 11/11 558 581 .. 1 24 [] 0.1 4e+02 LRRCT 2/2 593 643 .. 1 55 [] 28.4 0.00099 Alignments of top-scoring domains: LRR_TYP: domain 1 of 11, from 145 to 168: score 3.4, E = 1.6e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* n +L+ +nN L ++ pgaF g mKIAA1910 145 FYNAVSLHMENNGLHEIVPGAFLG 168 LRR_TYP: domain 2 of 11, from 169 to 192: score 11.6, E = 16 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L ++L+ +nN+++s ++F g mKIAA1910 169 LQLVKRLHINNNKIKSFRKQTFLG 192 LRR_TYP: domain 3 of 11, from 193 to 216: score 15.5, E = 5.4 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L L+ L ++N L+ + pgaFq+ mKIAA1910 193 LDDLEYLQADFNLLRDIDPGAFQD 216 LRR_TYP: domain 4 of 11, from 217 to 240: score 26.7, E = 0.0033 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L++L L++N +++LP+++Fq mKIAA1910 217 LNKLEVLILNDNLISTLPANVFQY 240 LRR_TYP: domain 5 of 11, from 244 to 264: score 2.2, E = 2.2e+02 *->LpnLreLdLsnNqLtsLP.pgaFqg<-* ++LdL +N+L++LP +++++ mKIAA1910 244 ----THLDLRGNRLKTLPyEEVLEQ 264 LRRCT: domain 1 of 2, from 276 to 326: score 31.9, E = 8.5e-05 *->NPfnCDCeLrwLlrwleaqnnealqdpvs..slrCasPeslrGqpll NP++C+C+L+ L++wle+ ++++++ ++++C+ P +l+G + l mKIAA1910 276 NPWDCTCDLLSLKEWLEN-----IPKNALigRVVCEAPTRLQG-KDL 316 lllpsefsCp<-* + + Cp mKIAA1910 317 NETTEQDLCP 326 LRR_TYP: domain 6 of 11, from 438 to 461: score 10.5, E = 22 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+n +eL L +N++ s+ F + mKIAA1910 438 LSNVQELFLRDNKIHSIRKSHFVD 461 LRR_TYP: domain 7 of 11, from 462 to 485: score 11.3, E = 17 *->LpnLreLdLsnNqLtsLPpgaFqg<-* nL LdL+nN++ + +++F + mKIAA1910 462 YKNLILLDLGNNNIANIENNTFKN 485 LRR_TYP: domain 8 of 11, from 486 to 509: score 9.2, E = 31 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L Lr L+ ++N L +L ++ F+g mKIAA1910 486 LLDLRWLYMDSNYLDTLSREKFAG 509 LRR_TYP: domain 9 of 11, from 510 to 533: score 19.2, E = 0.58 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L+ ++N+++ + pg+F+ mKIAA1910 510 LQNLEYLNVEYNAIQLILPGTFNA 533 [output cut off at A = 10 top alignments] //