hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21737/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1910  ( 760 res)   mbg21737

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             81.2    2.2e-20  12
LRRNT    Leucine rich repeat N-terminal domain           13.5       0.68   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRRNT      1/2      87   115 ..     1    34 []     1.0       28
LRR_1      1/12    123   146 ..     1    25 []     9.5       53
LRR_1      2/12    147   170 ..     1    25 []     6.0    2e+02
LRR_1      3/12    171   194 ..     1    25 []     5.1  2.9e+02
LRR_1      4/12    195   218 ..     1    25 []    10.4       37
LRR_1      5/12    219   239 ..     1    25 []    10.0       44
LRR_1      6/12    242   263 ..     1    25 []     6.0    2e+02
LRRNT      2/2     404   436 ..     1    34 []    17.9     0.19
LRR_1      7/12    440   463 ..     1    25 []     9.5       54
LRR_1      8/12    464   487 ..     1    25 []    13.0      7.3
LRR_1      9/12    488   511 ..     1    25 []    11.5       20
LRR_1     10/12    512   535 ..     1    25 []    13.3      5.7
LRR_1     11/12    536   556 ..     1    25 []     9.4       55
LRR_1     12/12    559   580 ..     1    25 []     7.0  1.4e+02

Alignments of top-scoring domains:
LRRNT: domain 1 of 2, from 87 to 115: score 1.0, E = 28
                   *->aCp.apCtCserytdglvVdCsgrgLtvavPrdlP<-*
                       C++ +C C e    +l+VdC ++g t    + l+   
   mKIAA1910    87    VCKeKICSCNE-IEGDLHVDCEKKGFT----S-LQ    115  

LRR_1: domain 1 of 12, from 123 to 146: score 9.5, E = 53
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +  +L L+g N sl++ +p+++ ++    
   mKIAA1910   123    QFYHLFLHG-N-SLTRLFPNEFaNFY    146  

LRR_1: domain 2 of 12, from 147 to 170: score 6.0, E = 2e+02
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      n  +L++++ N  l  ++ p+++ gl+   
   mKIAA1910   147    NAVSLHMEN-N-GLH-EIVPGaFlGLQ    170  

LRR_1: domain 3 of 12, from 171 to 194: score 5.1, E = 2.9e+02
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                       ++ L++++ N ++ +s+ + ++ gl    
   mKIAA1910   171    LVKRLHINN-N-KI-KSFRKQtFlGLD    194  

LRR_1: domain 4 of 12, from 195 to 218: score 10.4, E = 37
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                       Le+L  +  N  l +++ p+++++l    
   mKIAA1910   195    DLEYLQADF-N-LL-RDIDPGaFqDLN    218  

LRR_1: domain 5 of 12, from 219 to 239: score 10.0, E = 44
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      +Le+L L++ N  +s +lp++ +++   
   mKIAA1910   219    KLEVLILND-N-LIS-TLPAN-VFQ    239  

LRR_1: domain 6 of 12, from 242 to 263: score 6.0, E = 2e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       +++LdL+g N +l ++lp   ++l    
   mKIAA1910   242    PITHLDLRG-N-RL-KTLPY-EeVLE    263  

LRRNT: domain 2 of 2, from 404 to 436: score 17.9, E = 0.19
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                       Cp +C C + ++ gl+++C +r+   ++ +  P   
   mKIAA1910   404    PCPGGCSCDHIPGSGLKMNCNNRNVS-SLADLKP    436  

LRR_1: domain 7 of 12, from 440 to 463: score 9.5, E = 54
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      n++eL L++ N ++  s+ +s++ + +   
   mKIAA1910   440    NVQELFLRD-N-KIH-SIRKShFvDYK    463  

LRR_1: domain 8 of 12, from 464 to 487: score 13.0, E = 7.3
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nL  LdL++ N ++   ++++++++l    
   mKIAA1910   464    NLILLDLGN-N-NIA-NIENNtFkNLL    487  

LRR_1: domain 9 of 12, from 488 to 511: score 11.5, E = 20
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                       L++L++++ N +l ++l+ +++ gl+   
   mKIAA1910   488    DLRWLYMDS-N-YL-DTLSREkFaGLQ    511  

LRR_1: domain 10 of 12, from 512 to 535: score 13.3, E = 5.7
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nLe+L++++ N  ++  + p++++ +p   
   mKIAA1910   512    NLEYLNVEY-N-AIQ-LILPGtFnAMP    535  

LRR_1: domain 11 of 12, from 536 to 556: score 9.4, E = 55
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      +L++L L++ N  l +slp + ++    
   mKIAA1910   536    KLRILILNN-N-LL-RSLPVD-VFA    556  

LRR_1: domain 12 of 12, from 559 to 580: score 7.0, E = 1.4e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L +L+L++ N ++   lp   ++l    
   mKIAA1910   559    SLSKLSLHN-N-YFM-YLPV-AgVLD    580  

//