hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh07319/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1905  ( 742 res)   mnh07319

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Gelsolin Gelsolin repeat                                405.6   4.6e-118   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Gelsolin   1/6      53   135 ..     1    96 []    74.9  1.7e-18
Gelsolin   2/6     173   248 ..     1    96 []    83.3  4.8e-21
Gelsolin   3/6     290   368 ..     1    96 []    70.6  3.2e-17
Gelsolin   4/6     432   510 ..     1    96 []    75.7  9.3e-19
Gelsolin   5/6     548   617 ..     1    96 []    28.0  0.00021
Gelsolin   6/6     653   731 ..     1    96 []    73.0  6.2e-18

Alignments of top-scoring domains:
Gelsolin: domain 1 of 6, from 53 to 135: score 74.9, E = 1.7e-18
                   *->nfvlpppvplsqeslnsgdcyLLDngfk.gg.lnyiiflWvGkkssq
                      + +l+p+++ ++++++ gd+yL+++++k++ +++y +++W+Gk++sq
   mKIAA1905    53    KLELVPVPQGAYGDFYVGDAYLVLHTTKsSRgFSYRLHFWLGKECSQ 99   

                   WRKagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparF
                            de +aaa+ +v++dd+      ++++pv+ r+ qg e+  F
   mKIAA1905   100 ---------DESTAAAIFTVQMDDY------LGGKPVQSRELQGYESTDF 134  

                   l<-*
                   +   
   mKIAA1905   135 V    135  

Gelsolin: domain 2 of 6, from 173 to 248: score 83.3, E = 4.8e-21
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyiiflWvGkkssqWR
                      ++v++++vpls+es+n gdc+++D g+      +i++W+G+ ++   
   mKIAA1905   173    RVVRATEVPLSWESFNKGDCFIIDLGT------EIYQWCGSSCNK-- 211  

                   KagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparFl<
                           e+l+a ++a +++d++     r ++ ++++v++g ep +++ 
   mKIAA1905   212 -------YERLKASQVAIGIRDNE-----RKGRSQLIVVEEGSEPSELM  248  

                   -*
                     
   mKIAA1905     -    -    

Gelsolin: domain 3 of 6, from 290 to 368: score 70.6, E = 3.2e-17
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyiiflWvGkkssqWR
                       + ++++ p+s ++l s+ c++LD+g       +if+W Gk++++  
   mKIAA1905   290    VTLVAEENPFSMGMLLSEECFILDHGA----AKQIFVWKGKNANP-- 330  

                   KagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparFl<
                          +e++ a+ +a+e++++++    +++ +++++ ++g+e++ F+ 
   mKIAA1905   331 -------QERKTAMKTAEEFLQKMK----YSTNTQIQVLPEGGETPIFK  368  

                   -*
                     
   mKIAA1905     -    -    

Gelsolin: domain 4 of 6, from 432 to 510: score 75.7, E = 9.3e-19
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyiiflWvGkkssqWR
                      n+ ++ ++p s++ +++gdcy++++++  + ++ii+ W+G ++++  
   mKIAA1905   432    NSGRVQIDPSSYGEFYGGDCYIILYTY--PRGQIIYTWQGANATR-- 474  

                   KagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparFl<
                          de++++a+l+v+ld +      +++ +v++rv qgkepa++l 
   mKIAA1905   475 -------DELTMSAFLTVQLDRS------LGGQAVQVRVSQGKEPAHLL  510  

                   -*
                     
   mKIAA1905     -    -    

Gelsolin: domain 5 of 6, from 548 to 617: score 28.0, E = 0.00021
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyiiflWvGkkssqWR
                       +++  +v+ ++ slns+d ++L          + f+W+Gk++sq  
   mKIAA1905   548    SITRIVEVDVDANSLNSNDTFVLKLPR-----NNGFIWIGKGASQ-- 587  

                   KagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparFl<
                          +e++ a ++a+ l          ++     r ++gkep++F+ 
   mKIAA1905   588 -------EEEKGAEYVADVL---------KCKA---SRIQEGKEPEEFW  617  

                   -*
                     
   mKIAA1905     -    -    

Gelsolin: domain 6 of 6, from 653 to 731: score 73.0, E = 6.2e-18
                   *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyiiflWvGkkssqWR
                      +++++ p +++q++l ++d++LLD++       +if+W+Gk +++  
   mKIAA1905   653    FIIEEVPGEFTQDDLAEDDVMLLDAWE------QIFIWIGKDANE-- 691  

                   KagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparFl<
                           ek++++ +a+ ++++++    r+++++++   qg+ep+ F  
   mKIAA1905   692 -------VEKKESVKSAKMYLETDPSG--RDKRTPIVIIKQGHEPPTFT  731  

                   -*
                     
   mKIAA1905     -    -    

//