hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph04215/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1902  ( 293 res)   mph04215

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       -12.5    1.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1       1   259 [.     1   499 []   -12.5  1.5e-05

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 1 to 259: score -12.5, E = 1.5e-05
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd
                                        +                            
   mKIAA1902     1    ------------------I---------------------------- 1    

                   kldeekfLynnldldeleelFaakektkkakkrsvsekksklkkkkvqqn
                                                                     
   mKIAA1902     - -------------------------------------------------- -    

                   lkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvdlle
                            q+                                       
   mKIAA1902     2 ---------QM--------------------------------------- 3    

                   qLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLipyl
                       + P                             q             
   mKIAA1902     4 ----LTP-----------------------------Q------------- 7    

                   eeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeliLai
                                          l +++aA+ ++++S k++k+Le+iLa+
   mKIAA1902     8 -----------------------LHAIIAASVSIKSSQKLKKILEIILAL 34   

                   GNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiirkky
                   GNyMN +s+r  G+++GFkL+sL+ L+d+Ks+d+k+TLLH++ +++++ky
   mKIAA1902    35 GNYMN-SSKR--GAVYGFKLQSLDLLLDTKSTDRKQTLLHYISNVVKEKY 81   

                   pdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsdpeg
                    +++ Fy++lh v+ka++v+le++  dvk+l+r   +++l+k+++  +  
   mKIAA1902    82 QQVTLFYNELHYVEKAAAVSLENVLLDVKELQR---GMDLTKREYTMH-- 126  

                   hpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpkdrd
                   ++  ++l+    Fl     k+ kLq d++  + +f+++v+y+ge+pk+  
   mKIAA1902   127 DH-NTLLKE---FLLHNEGKLKKLQEDAKIAQDAFDDVVKYFGENPKT-- 170  

                   vspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalrvke
                   ++p  FF +f++F k++k a een    + rk++E+ ++++  ++   + 
   mKIAA1902   171 TPPSVFFPVFVRFVKAYKQAEEEN----ELRKKQEQALMEKLLEQ---EA 213  

                   tteyeqssskqkeneerrvernplmdfeverdflgvldsllkelrtdssf
                   ++e+  ++s+  +       +++++++++e+ +++v+d+   ++++d ++
   mKIAA1902   214 LMEQQDAKSPSHKS------KRQQQELIAELRRRQVKDNRHVYEGKDGAI 257  

                   er<-*
                   e+   
   mKIAA1902   258 ED    259  

//