hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph04215/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1902  ( 293 res)   mph04215

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                        62.7    7.9e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1       1   188 [.     1   413 []    62.7  7.9e-15

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 1 to 188: score 62.7, E = 7.9e-15
                   *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse
                                                                     
   mKIAA1902     -    ----------------------------------------------- -    

                   lEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLrkls
                                                                     
   mKIAA1902     - -------------------------------------------------- -    

                   klppeeivqAilemDedvLgvvlflkemldllenLlkmaPtkeElkklqe
                                                               +++l  
   mKIAA1902     1 --------------------------------------------IQML-- 4    

                   keykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeevee
                                                                     
   mKIAA1902     5 T------------------------------------------------- 5    

                   lkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGFkL
                     p+l +++aAs ++++S+k+kk+Le+iLalGNyMNs +r  G ++GFkL
   mKIAA1902     6 --PQLHAIIAASVSIKSSQKLKKILEIILALGNYMNSSKR--GAVYGFKL 51   

                   ssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelldfs
                   +sL+ L+d+Kst d+k+TLLH++  ++ e            k+++++ f+
   mKIAA1902    52 QSLDLLLDTKST-DRKQTLLHYISNVVKE------------KYQQVTLFY 88   

                   seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeepsd
                   +eL+ VekAa+v+le++  dvkeL++g++  ++e + + +          
   mKIAA1902    89 NELHYVEKAAAVSLENVLLDVKELQRGMDLTKREYTMHDH---------- 128  

                   kFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkdets
                     +  +keFl   e kl+kL+++ k a+++f+++++YF   ge+pk +t+
   mKIAA1902   129 --NTLLKEFLLHNEGKLKKLQEDAKIAQDAFDDVVKYF---GENPK-TTP 172  

                   peeFFkilrdFlnefk<-*
                   p +FF ++ +F++++k   
   mKIAA1902   173 PSVFFPVFVRFVKAYK    188  

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