hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg03874/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1901  ( 1234 res)   mpg03874

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    330.5    1.1e-94   1
TyrKc    Tyrosine kinase, catalytic domain               77.1    2.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TyrKc      1/1       7   260 ..     1   280 []    77.1  2.2e-18
S_TKc      1/1       7   261 ..     1   231 []   330.5  1.1e-94

Alignments of top-scoring domains:
TyrKc: domain 1 of 1, from 7 to 260: score 77.1, E = 2.2e-18
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda.....kee
                       + ++k+GeG FG   k++l +++++++   +K ++ +  ++++++e
   mKIAA1901     7    YVRLQKIGEGSFG---KAVLVkstedgRHYVIKEINISRmsdkeRQE 50   

                   FlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdL
                    +rE  ++ +   kHpNiV+      e        + l+ivm y+egGdL
   mKIAA1901    51 SRREVAVLANM--KHPNIVQYKESFEEN-------GSLYIVMDYCEGGDL 91   

                   ldyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvge
                    +++ + ++  ++ ++ l++ +QI+    + +++++ HRD+   N+ +++
   mKIAA1901    92 FKRINAQKGAlFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTK 141  

                   nkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl
                   +++v  +DFG +R l +                  +        ++PE  
   mKIAA1901   142 DGTVQLGDFGIARVLNST-------VELAR----TCI--GTPYYLSPEIC 178  

                   kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy
                     + ++ kSD+W+ G +L+E++tl      g      + + ++ ++ +G 
   mKIAA1901   179 ENKPYNNKSDIWALGCVLYELCTLKHAFEAG------NMKNLVLKIISGS 222  

                   RlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-*
                    +p  ++         + +l +l +q  +++P dRP+ + +  + +   
   mKIAA1901   223 FPPVSPH--------YSYDLRSLLSQLFKRNPRDRPSVNSIlEKGF    260  

S_TKc: domain 1 of 1, from 7 to 261: score 330.5, E = 1.1e-94
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y  l+k+G+G+FGk  l++ +++gr++ iK+i+ ++ ++++++  +r
   mKIAA1901     7    YVRLQKIGEGSFGKAVLVKSTEDGRHYVIKEINisrmsdkerQESRR 53   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E+++L + +HPNIV+++++fe++++ly+Vm+yceG  GdLf+++  +++ 
   mKIAA1901    54 EVAVLANmKHPNIVQYKESFEEnGSLYIVMDYCEG--GDLFKRINAQKGA 101  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        + E+++  +f Qi++aL++ H+++I+HRD+K +Ni+L+++++v l
   mKIAA1901   102 L----FQEdQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKdgTVQL 147  

                   aDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil
                   +DFG+Ar+l+++ +  +t++GTp+Y++PE++++++Y+  ++DiW+lGc+l
   mKIAA1901   148 GDFGIARVLnstvelaRTCIGTPYYLSPEICenkPYNN-KSDIWALGCVL 196  

                   yElltGkpPFp...qldlifkkig..........SpeakdLikklLvkdP
                   yEl+t k  F+ ++  +l++k+i ++ ++ ++++S ++++L+++l++++P
   mKIAA1901   197 YELCTLKHAFEagnMKNLVLKIISgsfppvsphySYDLRSLLSQLFKRNP 246  

                   ekRlta.eaLedeldikaHPff<-*
                   ++R++++ +Le         f+   
   mKIAA1901   247 RDRPSVnSILE-------KGFI    261  

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