hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06467/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1900  ( 546 res)   mbg06467

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        99.1    5.3e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      49   146 ..     1   114 []    99.1  5.3e-25

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 49 to 146: score 99.1, E = 5.3e-25
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvtl++++         +kfha  HkavLaac   S+yF+a+f+  
   mKIAA1900    49    CDVTLIAEE---------QKFHA--HKAVLAAC---SDYFRAMFSLc 81   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     +++ ++++l +      v+   ++  L+f Yt+++ l +     ++++
   mKIAA1900    82 mvesgadeVNLRG------VTSLGLKQALEFAYTgQILLEPG---VIQDV 122  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++ + l    q+ +l  lC  +l++ l   
   mKIAA1900   123 LAAGSHL----QLLeLLNLCSHYLIQEL    146  

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