hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph04252/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1899  ( 828 res)   mph04252

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Spc97_Spc98 Spc97 / Spc98 family                        -47.1    5.2e-07   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Spc97_Spc98   1/1     109   718 ..     1   784 []   -47.1  5.2e-07

Alignments of top-scoring domains:
Spc97_Spc98: domain 1 of 1, from 109 to 718: score -47.1, E = 5.2e-07
                   *->LlrdlLYaLlGid..GkyikfnneidYmDrNrnkneasateafklrv
                       + +lL++L+  +++++y+   +e                    + v
   mKIAA1899   109    -ILSLLLCLSDSPsnSNYVETPRE--------------------KEV 134  

                   qiskflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfnei
                   + + +++ ++  +  + + lG   +               +e s++    
   mKIAA1899   135 EKKDDFDWGKYLMEGEEIGLGPNID-----------TPNWSEDSDDE--- 170  

                   rkrsasqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrddlsls
                                    +  + +  +eeL+d+ +++ +            
   mKIAA1899   171 ----------------ALYKYFINFKEELTDIEKCVISS----------- 193  

                   LfdlallslktdassskkslslrrLlrwlqpplsrlreLa.vskelilsv
                                   ++  +l +++++l p l  l+ L +v+ + + ++
   mKIAA1899   194 ----------------DTTITLAIVVNKLAPRLAQLKVLDkVFSTGV-AE 226  

                   vlqiGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpevrkll
                   v               d ++v + + lL++l  yk ++e++ + e+ +  
   mKIAA1899   227 V-------------PPDTRNVVRASHLLNTL--YKAILEYDNVGEASEQT 261  

                   ekLL....teisgPyykmlenWiykGeLeDtygEFFIkeneditsmslQv
                   ++LL +   e+++Py+  + +Wi++G L D  +EF I++n+ + ++    
   mKIAA1899   262 VSLLfslwVETVRPYLQTVDEWIVHGHLWDGAREFIIQRNKNV-PVN--- 307  

                   enskkyleeleklillkpedksdryWhkkYkLrp................
                                          + W + Y+L + +++++++++ +++ +
   mKIAA1899   308 ---------------------HRDFWYATYTLYSvsektenedkvsdsas 336  

                   ..............dmiPsFlpmdlAnkILltGKslNfLrecckelnikw
                    +++++++++++++ m+ sFl+  +   I ++GKs ++L++ +     ++
   mKIAA1899   337 assgsdqgpssrqhTMV-SFLK-PVLKQIIMAGKSMQLLKNLNCAE--GP 382  

                   sqepneiis.........................................
                   + ++ +++ ++++  +   ++ + + ++++++ ++  +++++++++  + 
   mKIAA1899   383 ACQAAARDAerkslytlflesiqlrlqhgedsaphivnedqttkenlikm 432  

                   ...................................NevkdINvnidknsd
                   ++  +++ + ++ +++    +  +   ++++ +++    dI v       
   mKIAA1899   433 qsiaerhlelddihdpllainfarlyleqsdfhekFAGGDICVDR----- 477  

                   tnqssdssilisddvidkrirlerlNldqyissdHIkvgefasDlekSer
                                                                     
   mKIAA1899     - -------------------------------------------------- -    

                   rtsvgmnksiiNiKvkeNvsdleKrflkkyrdeyelesyeadksaeelkr
                                                               + e++ 
   mKIAA1899   478 --------------------------------------------SSESVT 483  

                   lkllsyftdtsfeelIdeayeeaakhLldllveeydLlgHlkalKrYLLL
                   ++ +  +  + +   Id++y      L + l+  + L++ l+a+++++L+
   mKIAA1899   484 CQTFELTLRSCLYPHIDKQYLHCCGNLMQTLKRDFRLVEYLQAMRNFFLM 533  

                   gqGDFiqafmdkakeeLGekkPhykknaiadllsNFFphkLtslLqlAl.
                   + GD +  f+   +++   +++         ++s      L+ +Lq+A++
   mKIAA1899   534 EGGDTMYDFYTSIFDKI--REK-----ETWQNVS-----FLNVQLQEAVg 571  

                   .rksnafdknnlrlesitievdplkskdvedllnriktneenntnnmNev
                   +r++ +  +                                         
   mKIAA1899   572 qRYPED--SL---------------------------------------- 579  

                   nNenkavdavsdevlknldankkldsrvlepvpgdlnvtGWevfsLeYkv
                                   +l +    +  + ++    l+v ++++++L+Ykv
   mKIAA1899   580 ----------------RLSI----SFENVDTTKKKLPVHILDGLTLSYKV 609  

                   dwPLslvftpevFlskYlriFrfLwrlKrvehqLemkiWkehmfnkgsnn
                   +wP ++v++ e+  + Y+ +F  L++ K  ++ L   + + +  n+  + 
   mKIAA1899   610 PWPVDIVISVEC-QKIYNQVFLLLLQIKWAKYSLD-VLLFGELGNAAER- 656  

                   asrklss............pikreiaqalrrssllReeMlhFvknlqyYi
                    s  + + +++++++++ +p k+++ q+++r++llR   +hFv++l +Yi
   mKIAA1899   657 -SQAKEDiprdqdtpsqfgPPKESLRQQIHRMFLLRVKLMHFVNSLHNYI 705  

                   lfeVIEsnWqeHlq<-*
                   +  +++s+  e +q   
   mKIAA1899   706 MTRILHSTGLE-FQ    718  

//