hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mph/mph02252/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1897  ( 717 res)   mph02252

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00094 TIGR00094: conserved hypothetical protein T   259.5    8.1e-77   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00094   1/2     310   562 ..    90   359 ..   208.0  1.7e-61
TIGR00094   2/2     572   704 ..   396   544 .]    51.4  7.7e-15

Alignments of top-scoring domains:
TIGR00094: domain 1 of 2, from 310 to 562: score 208.0, E = 1.7e-61
                   *->kGefihitveKenwdTLevlrvlAkfLgvsrreigFAGlKDKrAVTt
                      +G + h+ + Ken+dT+++++vl+k L+v    +++ G+KDKrA+T+
   mKIAA1897   310    RGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITV 356  

                   QwvSclkvklePLeepdlsnfqlkgvkilevnyhnrKirLGdLkGNrFri
                   Q +  lk+ +    ++  +n  l ++k++++ y +  ++LG+L GN F++
   mKIAA1897   357 QEIAVLKISAQ---RLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTV 403  

                   riRdveilnsdeslketLnelcklLSEkGfPNYFGlQRFGsiRiiTHlVG
                   ++R  + + ++  ++++ + l +     Gf+NY+G+QRFG++ + T  VG
   mKIAA1897   404 VLRNIT-GTDEQ-VQQAMQSLRE----TGFINYYGMQRFGTTAVPTYQVG 447  

                   RlllesdweganhqyalkplqgetkvskeaRrifdeskdaksaLfnlpka
                   R++l++ w +  ++++      e     + R+ ++ +kd +saL++lp+ 
   mKIAA1897   448 RAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPASALKKLPVK 497  

                   lRyErallnsllegkkeEDGeySdnsylaAimsLpknlktmfvhAYQsYl
                      E  ll+ l++           +  + A++++p+n + m++h YQsY+
   mKIAA1897   498 RCVEGQLLRGLSRY--------GMKNIVSAFGIIPRNNRLMYIHSYQSYV 539  

                   FNrlvserielmgtaplpGdivi<-*
                   +N  vs rie++g+ p+pGd+v+   
   mKIAA1897   540 WNTMVSRRIEEYGLRPVPGDLVL    562  

TIGR00094: domain 2 of 2, from 572 to 704: score 51.4, E = 7.7e-15
                   *->aldvklAydrkkelleriaLdvlsvSlEdfkalrvpkLlsdhakalg
                      ++dv   y   +++++ +++dv ++   ++  +++ +L +d+ +  +
   mKIAA1897   572    EDDVDN-YSIHDVVMPLPGFDVIYPKH-KISEAYREMLAADNLDIDN 616  

                   srrfswdfweegssetVkqKPKSLEYRiiHYDDPSqqLVNTDLDiLNN..
                   +r  ++d+++ g ++ ++ +P+S+ + ++ YDDP   L NTD+D L  ++
   mKIAA1897   617 MRHTIRDYSLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNLEGkp 666  

                   ..TRAKESGqKYmKAKLDRYmPDKGGEktdleLkFyLPkGsYATsvLREl
                   ++  A E                  G   +l   F+LP + YAT++ RE 
   mKIAA1897   667 ppVFASE------------------GKYRALKMDFSLPPSTYATMAIREV 698  

                   ikkege<-*
                   +k +++   
   mKIAA1897   699 LKMDTS    704  

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