hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02252/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1897  ( 717 res)   mph02252

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TruD     tRNA pseudouridine synthase D (TruD)           194.1    2.1e-54   1
R3H      R3H domain                                       9.9       0.22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
R3H        1/1     236   292 ..     1    58 []     9.9     0.22
TruD       1/1     284   703 ..     1   475 []   194.1  2.1e-54

Alignments of top-scoring domains:
R3H: domain 1 of 1, from 236 to 292: score 9.9, E = 0.22
                   *->eeeiadfvrvkstgksvflpPMtsyeRkliHqlae.efgdLeseSeG
                      ee  +   + k+t+  ++    t+++R +iHq++++ f++Le++ e+
   mKIAA1897   236    EELQLF--KNKETSVAIEVIEDTKEKRTVIHQAIKsLFPGLETKTED 280  

                   egpkRrvviskk<-*
                   ++  +++v ++    
   mKIAA1897   281 REGRKYIVAYHA    292  

TruD: domain 1 of 1, from 284 to 703: score 194.1, E = 2.1e-54
                   *->eellyltgtpgiggrlkaePeDFiVeEvlgyepsdWKGgeGehllll
                      +++  ++ ++g+++   a+P      ++   ++s     +G ++++ 
   mKIAA1897   284    RKYIVAYHAAGKKA--LANP------RKHSWPKS-----RGSYCHFV 317  

                   vrKrgwdTlfaareLAkaLgisqrrisYAGlKDkrAvTtQwfSlhlpkke
                   + K+++dT++a+++L+k L+++++ +sY G+KDkrA+T Q +   + k  
   mKIAA1897   318 LYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIA--VLKIS 365  

                   apdlsafnsqlkgvkilelgrhsrKLrlGdLkGNrFvIrlrgasgeeaek
                   a++l+ +n  l ++k+   ++ + +L+lG+L+GN+F+++lr ++g   e+
   mKIAA1897   366 AQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITG-TDEQ 414  

                   lkqrLeeiaekilkvlekGGvPNYFGsQRFGsrrsvTHivGKlivlgdwE
                   + q+ + + e+        G++NY+G QRFG+    T  vG++i+++ w 
   mKIAA1897   415 VQQAMQSLRET--------GFINYYGMQRFGTTAVPTYQVGRAILQNSWT 456  

                   kAakvvklyvtkpfegEseevkdaRrflkegrGnlkeALeefPkrlryEr
                   +     +l++ +    E+    + R++  +++ +   AL+++P +  +E+
   mKIAA1897   457 EV---MDLILKPRSGAEKGYLVKCREEWAKTK-DPASALKKLPVKRCVEG 502  

                   niLkkLskgrslfdrwykgalralprnlrsffvsAyQSYLFNrilSrRie
                    +L+ Ls+ +    + +  a+  +prn r +++++yQSY +N ++SrRie
   mKIAA1897   503 QLLRGLSRYGM---KNIVSAFGIIPRNNRLMYIHSYQSYVWNTMVSRRIE 549  

                   lskiaeFSKEliyKVeeetrvlkeqfgfnraleGDilqlydsgswFlaek
                                           ++g +r+++GD + +        a++
   mKIAA1897   550 ------------------------EYG-LRPVPGDLVLKG-------ATP 567  

                   kekvtevdldalnerilagev......sptgpLpGekvlpssgsageiEk
                   ++             i++++v++ + +++  pLpG++v + +   +e  +
   mKIAA1897   568 TY-------------IEEDDVdnysihDVVMPLPGFDVIYPKHKISEAYR 604  

                   eiLeeegvllelFklkekelpelasmrgsRRalllkpqnLkwkyvgdseE
                   e L+ ++++  +++  +  ++    + g++R + ++pq ++w++v ++  
   mKIAA1897   605 EMLAADNLDIDNMRHTIRDYS----LSGAYRRIIIRPQSVSWEVVAYD-- 648  

                   dELnpekdt..........................ltleFsLPkGsYATs
                        ++  +  +++ ++ ++++++   ++++ + l+++FsLP+  YAT 
   mKIAA1897   649 -----DPKIplfntdvdnlegkpppvfasegkyraLKMDFSLPPSTYATM 693  

                   vLREilktdp<-*
                   ++RE+lk d    
   mKIAA1897   694 AIREVLKMDT    703  

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