hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05882a/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1896  ( 515 res)   mbg05882a

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Mito_carr Mitochondrial carrier protein                 312.7    4.5e-90   3
efhand    EF hand                                        44.2      3e-09   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
efhand      1/2      85   113 ..     1    29 []    21.2    0.025
efhand      2/2     116   144 ..     1    29 []    24.1   0.0032
Mito_carr   1/3     231   321 ..     1   100 []   109.8  5.1e-29
Mito_carr   2/3     325   414 ..     1   100 []   124.3  2.2e-33
Mito_carr   3/3     422   514 ..     1   100 []    84.1  2.8e-21

Alignments of top-scoring domains:
efhand: domain 1 of 2, from 85 to 113: score 21.2, E = 0.025
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                        k++ +  DkD DG+++feEf+++l++    
   mKIAA1896    85    FPKKIVQAGDKDLDGQLDFEEFVHYLQDH    113  

efhand: domain 2 of 2, from 116 to 144: score 24.1, E = 0.0032
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +l+ +Fk +Dk +DG+I+ +E ++ l++l   
   mKIAA1896   116    KLRLVFKSLDKKNDGRIDAQEIMQSLRDL    144  

Mito_carr: domain 1 of 3, from 231 to 321: score 109.8, E = 5.1e-29
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQstqgadassaaggssk
                       ++++l+aGg AGa+++t+t+PlD++K+++Q           +++s+
   mKIAA1896   231    MWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQ---------VHASRSN 268  

                   YkgildcfkkiykeEGirgLYkGlgpnllrvaPyaaiyFgtYEtlKklll
                      i+++f ++++e+G ++L++G+g n+l++aP++ai+F++YE++K+l  
   mKIAA1896   269 NMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVG 318  

                   kkl<-*
                   ++    
   mKIAA1896   319 SDQ    321  

Mito_carr: domain 2 of 3, from 325 to 414: score 124.3, E = 2.2e-33
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQstqgadassaaggssk
                       + ++l+aG++AGaia++ +yP++v+KtR+            +++ +
   mKIAA1896   325    RIHERLVAGSLAGAIAQSSIYPMEVLKTRMA----------LRKTGQ 361  

                   YkgildcfkkiykeEGirgLYkGlgpnllrvaPyaaiyFgtYEtlKklll
                   Y+g+ldc+++i+++EG++++YkG+ pn+l+++Pya+i +++YEtlK+  l
   mKIAA1896   362 YSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWL 411  

                   kkl<-*
                    ++   
   mKIAA1896   412 QRY    414  

Mito_carr: domain 3 of 3, from 422 to 514: score 84.1, E = 2.8e-21
                   *->sflksllaGgiAGaiaatvtyPlDvvKtRLQstqgadassaaggssk
                      ++++ l++G i+ ++++++ yPl +v+tR+Q        +a+  +  
   mKIAA1896   422    GVFVLLACGTISSTCGQLASYPLALVRTRMQ-------AQASIEGAP 461  

                   YkgildcfkkiykeEGirgLYkGlgpnllrvaPyaaiyFgtYEtlKklll
                     ++ + fk+i+++EG +gLY+Gl pn+++v+P+ +i  ++YE lK  l 
   mKIAA1896   462 EVTMSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLG 511  

                   kkl<-*
                     +   
   mKIAA1896   512 VQS    514  

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