hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbf/mbf00006/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1894 ( 2796 res) mbf00006 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CCP Domain abundant in complement control protei 1216.3 0 25 CUB Domain first found in C1r, C1s, uEGF, and bo 984.1 2e-291 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CCP 1/25 1 50 [. 1 79 [] 12.2 2.3 CUB 1/9 54 162 .. 1 144 [] 138.4 7.8e-37 CCP 2/25 169 222 .. 1 79 [] 59.6 4e-13 CUB 2/9 226 336 .. 1 144 [] 91.4 1.1e-22 CCP 3/25 341 396 .. 1 79 [] 59.7 3.8e-13 CUB 3/9 400 508 .. 1 144 [] 97.9 1.2e-24 CCP 4/25 513 569 .. 1 79 [] 52.6 5.2e-11 CUB 4/9 573 682 .. 1 144 [] 100.9 1.4e-25 CCP 5/25 687 743 .. 1 79 [] 55.0 9.6e-12 CUB 5/9 747 855 .. 1 144 [] 127.7 1.2e-33 CCP 6/25 860 917 .. 1 79 [] 56.9 2.5e-12 CCP 7/25 967 1024 .. 1 79 [] 46.4 3.9e-09 CUB 6/9 1028 1136 .. 1 144 [] 132.6 4.2e-35 CCP 8/25 1141 1196 .. 1 79 [] 58.4 9.3e-13 CUB 7/9 1200 1308 .. 1 144 [] 121.5 9.1e-32 CCP 9/25 1313 1368 .. 1 79 [] 65.2 8.4e-15 CUB 8/9 1372 1479 .. 1 144 [] 126.0 4e-33 CCP 10/25 1484 1541 .. 1 79 [] 54.6 1.3e-11 CUB 9/9 1546 1656 .. 1 144 [] 94.5 1.3e-23 CCP 11/25 1658 1716 .. 1 79 [] 46.1 4.6e-09 CCP 12/25 1721 1778 .. 1 79 [] 54.1 1.8e-11 CCP 13/25 1783 1843 .. 1 79 [] 47.4 1.9e-09 CCP 14/25 1848 1901 .. 1 79 [] 63.7 2.3e-14 CCP 15/25 1906 1959 .. 1 79 [] 71.5 1e-16 CCP 16/25 1964 2017 .. 1 79 [] 63.0 3.9e-14 CCP 17/25 2022 2079 .. 1 79 [] 63.8 2.1e-14 CCP 18/25 2084 2137 .. 1 79 [] 56.4 3.7e-12 CCP 19/25 2145 2198 .. 1 79 [] 63.0 3.7e-14 CCP 20/25 2203 2257 .. 1 79 [] 58.8 6.9e-13 CCP 21/25 2262 2317 .. 1 79 [] 53.6 2.6e-11 CCP 22/25 2322 2375 .. 1 79 [] 53.6 2.6e-11 CCP 23/25 2380 2433 .. 1 79 [] 54.2 1.7e-11 CCP 24/25 2441 2495 .. 1 79 [] 61.3 1.2e-13 CCP 25/25 2500 2555 .. 1 79 [] 53.0 4e-11 Alignments of top-scoring domains: CCP: domain 1 of 25, from 1 to 50: score 12.2, E = 2.3 *->CpPppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlvG n+r + +++ Gs++++ C++G+ + mKIAA1894 1 ----------NARRFG----------DNFQLGSSISVICEEGFIKTQ 27 gsqpekSrestsstitCtsn.....WspppsgplPtC<-* g +titC+ +++ Ws+p+ P+C mKIAA1894 28 G----------TETITCILMdgkvmWSGPI----PRC 50 CUB: domain 1 of 9, from 54 to 162: score 138.4, E = 7.8e-37 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg++ a+s G+i SP++P+ Y ++l+C+W+I+a+pG mKIAA1894 54 CGGHFSAPS------GVILSPGWPGY-----YKDSLNCEWVIEAEPG 89 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + i+++F+ F++E yD +e++DGp+ spllG mKIAA1894 90 HSIKITFER---FQTEL-------------NYDVLEVHDGPN-LLSPLLG 122 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< + G++ p+++ SssN +++ F +D+s + + GF+++Y++v mKIAA1894 123 ----SYNGTQvPqFLFSSSNFIYLLFTTDNSRS-----NNGFKIHYESV 162 -* mKIAA1894 - - CCP: domain 2 of 25, from 169 to 222: score 59.6, E = 4e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ + +Gr +++ +s+Gstv++sC+pGY+l+ mKIAA1894 169 CLdPG---IPVHGRRYGHD----------FSIGSTVSFSCDPGYRLS 202 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* ++ + C n+ Ws+p PtC mKIAA1894 203 H-----------EEPLLCEKNhwWSHPL----PTC 222 CUB: domain 2 of 9, from 226 to 336: score 91.4, E = 1.1e-22 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+++++s Gti SP+YP+ Ypn+l+C+Wt+ ++ G mKIAA1894 226 CGGDVRGPS------GTILSPGYPEF-----YPNSLNCTWTVDVTHG 261 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + ++++F F+lE++ Dy+ i + s + l+ mKIAA1894 262 KGVQFNFHT---FHLEDH-------------HDYLLITENGS--FTQPLA 293 ntearfCGse......p.iisSssNsmtvtFvsDssvqgkgktkrGFsar r+ Gse +++ + +++ + ++ ++F sD+s++ + GF+++ mKIAA1894 294 ----RLTGSElpstinAgLYGNF--RAQLRFISDFSIS-----YEGFNIT 332 Ysav<-* +s mKIAA1894 333 FSEY 336 CCP: domain 3 of 25, from 341 to 396: score 59.7, E = 3.8e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +++G+ ++ s + +G+t+t+sC GY+l mKIAA1894 341 CEdPG---IPQYGSRVGFS----------FGVGDTLTFSCSLGYRLE 374 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G ss+i C+ ++++ Ws p P+C mKIAA1894 375 G-----------SSEIICLGGgrrvWSAPL----PRC 396 CUB: domain 3 of 9, from 400 to 508: score 97.9, E = 1.2e-24 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CG + t ++ G++ SPnYP + Y+nn eC++ +++ G mKIAA1894 400 CGASATNNE------GILLSPNYPLN-----YENNHECIYSLQVQAG 435 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + i+++ F+l D ++iyDG + + llG mKIAA1894 436 KGINISART---FHLAQG--------------DVLKIYDGKD-KTTHLLG 467 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav f G + + ++sS+sN+++++F sDs ++ GF++ Y+++ mKIAA1894 468 ----AFTGASmrGlTLSSTSNQLWLEFNSDSEGT-----DEGFQLVYTSF 508 <-* mKIAA1894 - - CCP: domain 4 of 25, from 513 to 569: score 52.6, E = 5.2e-11 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ ++ G+ +s + + Gst+ y CnpGYtl+ mKIAA1894 513 CEdPG---IPQFGYKISDQ---------GHFAGSTIIYGCNPGYTLH 547 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G ss ++C+ ++++ W+ p P+C mKIAA1894 548 G-----------SSLLKCMTGerraWDYPL----PSC 569 CUB: domain 4 of 9, from 573 to 682: score 100.9, E = 1.4e-25 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+++++ss G+i SP+YP + Y+nnl C W I++ pG mKIAA1894 573 CGGRFKGESS-----GRILSPGYPFP-----YDNNLRCMWMIEVDPG 609 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + ++L+F Fd+E s D + ++DGp + ll mKIAA1894 610 NIVSLQFLA---FDTEAS-------------HDILRVWDGPP-ENEMLLK 642 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav +Gs + +i s+ N +t++F +D+ ++ k+GF +++s+ mKIAA1894 643 ----EVSGSLipDgIHST-LNIVTIQFDTDFYIS-----KSGFAIQFSSS 682 <-* mKIAA1894 - - CCP: domain 5 of 25, from 687 to 743: score 55.0, E = 9.6e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +++nG+ ++ + + G+tv ++C+pGY+l+ mKIAA1894 687 CRdPG---VPMNGTRNG----------DGREPGDTVVFQCDPGYELQ 720 GgsqpekSrestsstitCtsn.....WspppsgplPtC<-* G ++itC+ +++ W p+p P C mKIAA1894 721 G-----------QERITCIQVenryfWQPSP----PVC 743 CUB: domain 5 of 9, from 747 to 855: score 127.7, E = 1.2e-33 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+lt+ss G i SPn+P + Yp + +C WtIs+ mKIAA1894 747 CGGNLTGSS------GFILSPNFPHP-----YPHSRDCDWTISVNTD 782 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG y+i+L F + F +E+ yD++ iyDGp+ spl+G mKIAA1894 783 YVISLAFIS---FSIEP-------------NYDFLYIYDGPD-SNSPLIG 815 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< f s+ p+ i SssN+m + F+sD+sv+ ++GF++ Y a mKIAA1894 816 ----SFQDSKlPeRIESSSNTMHLAFRSDGSVS-----YTGFHLEYKAK 855 -* mKIAA1894 - - [output cut off at A = 10 top alignments] //