hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj27275/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1892  ( 476 res)   mfj27275

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    40.8    1.8e-07   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     100   139 ..     1    46 []     1.7  2.6e+02
WD40       2/4     195   234 ..     1    46 []    29.0  0.00065
WD40       3/4     259   303 ..     1    46 []    11.4      7.8
WD40       4/4     351   389 ..     1    46 []     0.5  4.1e+02

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 100 to 139: score 1.7, E = 2.6e+02
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      +    r+++ g  +   V + ++  +       +++++g + +t+ +
   mKIAA1892   100    SlLKEREFHlGTLN--KVFASQWLNH-------RQVVCGTkCNTLFV 137  

                   Wd<-*
                    d   
   mKIAA1892   138 VD    139  

WD40: domain 2 of 4, from 195 to 234: score 29.0, E = 0.00065
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t  ++++ ++gH++  ++ s+a+  d       ++ +sgs+Dg+  l
   mKIAA1892   195    TlDPVCVGDdGHKD--WIFSIAWIND-------TMAVSGSrDGSMGL 232  

                   Wd<-*
                   W+   
   mKIAA1892   233 WE    234  

WD40: domain 3 of 4, from 259 to 303: score 11.4, E = 7.8
                   *->t.kllrtlk.gHtge..spVtsvafspdggssdspnllasgs.Dgti
                      t+k l+ +++  t+++++ V+++af+  +      + l + s Dg  
   mKIAA1892   259    ThKALKDIPkEDTNPdnCKVRALAFNNKN------KELGAVSlDGYF 299  

                   rlWd<-*
                   +lW+   
   mKIAA1892   300 HLWK    303  

WD40: domain 4 of 4, from 351 to 389: score 0.5, E = 4.1e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++ ++++  +g s+++sv+f  +        ++ +g + g++ ++
   mKIAA1892   351    SyNVKSVCSRERG-SGIRSVSFYEH--------IITVGTgQGSLLFY 388  

                   d<-*
                   d   
   mKIAA1892   389 D    389  

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