hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj27275/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1892 ( 476 res) mfj27275 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD domain, G-beta repeat 33.5 5e-06 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/2 197 234 .. 1 38 [] 28.0 0.00021 WD40 2/2 266 303 .. 1 38 [] 5.1 48 Alignments of top-scoring domains: WD40: domain 1 of 2, from 197 to 234: score 28.0, E = 0.00021 *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-* +++ v ++gH++++ ++a+ d ++ +sgSrDg+ +W+ mKIAA1892 197 DPVCVGddGHKDWIFSIAWIND--TMAVSGSRDGSMGLWE 234 WD40: domain 2 of 2, from 266 to 303: score 5.1, E = 48 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* ++ + + V+++af+ + l S Dg ++W+ mKIAA1892 266 IPKEDTnPDNCKVRALAFNNK-NKELGAVSLDGYFHLWK 303 //