hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg14487/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1890 ( 875 res) mbg14487 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CCP Domain abundant in complement control protei 571.0 4.5e-167 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CCP 1/11 6 59 .. 1 79 [] 71.2 1.2e-16 CCP 2/11 64 117 .. 1 79 [] 64.5 1.3e-14 CCP 3/11 122 180 .. 1 79 [] 60.6 2e-13 CCP 4/11 185 238 .. 1 79 [] 61.8 8.7e-14 CCP 5/11 246 299 .. 1 79 [] 55.0 9.6e-12 CCP 6/11 304 358 .. 1 79 [] 42.3 6.3e-08 CCP 7/11 363 418 .. 1 79 [] 51.1 1.4e-10 CCP 8/11 423 476 .. 1 79 [] 55.2 8.7e-12 CCP 9/11 481 534 .. 1 79 [] 60.8 1.7e-13 CCP 10/11 542 596 .. 1 79 [] 62.4 5.9e-14 CCP 11/11 601 656 .. 1 79 [] 51.9 8.4e-11 Alignments of top-scoring domains: CCP: domain 1 of 11, from 6 to 59: score 71.2, E = 1.2e-16 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ +i nG++++ + +sy +tv y+CnpG++lv mKIAA1890 6 CGsPD---PIVNGHISG----------DGFSYRDTVVYQCNPGFRLV 39 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s++ C+ +++Ws+++ P C mKIAA1890 40 G-----------TSVRICLQDhkWSGQT----PVC 59 CCP: domain 2 of 11, from 64 to 117: score 64.5, E = 1.3e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ + +G ++++ ++ ++ v ++C++GY+l+ mKIAA1890 64 CGhPG---NPAHGLTNGTE----------FNLNDLVNFTCHTGYRLQ 97 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s+++C sn++Ws+p P+C mKIAA1890 98 G-----------ASRAQCRSNgqWSSPL----PIC 117 CCP: domain 3 of 11, from 122 to 180: score 60.6, E = 2e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++en+ ++ ++ + ++++yG++v y+C++G++l mKIAA1890 122 CSdPG---SVENAVRHGQQN-----FPESFEYGTSVMYHCKTGFYLL 160 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G ss +tC++++ W+ + P+C mKIAA1890 161 G-----------SSALTCMASglWDRSL----PKC 180 CCP: domain 4 of 11, from 185 to 238: score 61.8, E = 8.7e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ n+ +t+ + ++yG tv+ysC+ G l+ mKIAA1890 185 CGhPG---VPANAVLTG----------ELFTYGATVQYSCKGGQILT 218 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G +st++C+++++Ws++ P C mKIAA1890 219 G-----------NSTRVCQEDshWSGSL----PHC 238 CCP: domain 5 of 11, from 246 to 299: score 55.0, E = 9.6e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ +G+ + +++++ s +++sC+ G++l+ mKIAA1890 246 CGdPG---TPAHGSRLG----------DEFKTKSLLRFSCEMGHQLR 279 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s+++tC+ n++Ws+ + P C mKIAA1890 280 G-----------SAERTCLVNgsWSGVQ----PVC 299 CCP: domain 6 of 11, from 304 to 358: score 42.3, E = 6.3e-08 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ nG + ss + + s+v y C +GY+ + mKIAA1890 304 CGnPG---TPTNGMILSS---------DGILFSSSVIYACWEGYKTS 338 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G t++Ct+n++W+++ P C mKIAA1890 339 G-----------LMTRHCTANgtWTGTA----PDC 358 CCP: domain 7 of 11, from 363 to 418: score 51.1, E = 1.4e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ +++nG+ +++ ++++ tv+y+CnpGY + mKIAA1890 363 CGdPG---TLPNGIQFGTD----------FTFNKTVSYQCNPGYLME 396 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* + ts+ti+Ct +++W+ + P C mKIAA1890 397 PP---------TSPTIRCTKDgtWNQSR----PLC 418 CCP: domain 8 of 11, from 423 to 476: score 55.2, E = 8.7e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +Pp +++nG+v++s+ ++ G +++ysC +GY+l+ mKIAA1890 423 CNqPP---PVPNGKVEGSD----------FRWGASISYSCVDGYQLS 456 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* s+++ C + W +++ P+C mKIAA1890 457 H-----------SAILSCEGRgvWKGEV----PQC 476 CCP: domain 9 of 11, from 481 to 534: score 60.8, E = 1.7e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++P+ ++ Gr+++ s +++ s+v +C+p ++lv mKIAA1890 481 CGdPG---TPAEGRLSGKS----------FTFKSEVFIQCKPPFVLV 514 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G ss++tC++++ Ws+ + PtC mKIAA1890 515 G-----------SSRRTCQADgiWSGIQ----PTC 534 CCP: domain 10 of 11, from 542 to 596: score 62.4, E = 5.9e-14 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv Cp+P+ ++ G+ +ss+ y++Gstv ++C++GY+++ mKIAA1890 542 CPdPG---TPHFGIQNSSK---------GYEVGSTVFFRCRKGYHIQ 576 GgsqpekSrestsstitCtsn..WspppsgplPtC<-* G s+t+tC++n +Ws+ + C mKIAA1890 577 G-----------STTRTCLANltWSGIQ----TEC 596 [output cut off at A = 10 top alignments] //