hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg14487/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1890 ( 875 res) mbg14487 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sushi Sushi domain (SCR repeat) 530.2 1.4e-155 11 Keratin_B2 Keratin, high sulfur B2 protein -68.6 0.24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sushi 1/11 6 59 .. 1 64 [] 65.8 9.5e-16 Sushi 2/11 64 117 .. 1 64 [] 69.7 6e-17 Sushi 3/11 122 180 .. 1 64 [] 58.3 1.7e-13 Sushi 4/11 185 238 .. 1 64 [] 53.5 4.7e-12 Sushi 5/11 246 299 .. 1 64 [] 49.2 9e-11 Sushi 6/11 304 358 .. 1 64 [] 40.1 5e-08 Sushi 7/11 363 418 .. 1 64 [] 58.8 1.2e-13 Sushi 8/11 423 476 .. 1 64 [] 53.2 5.7e-12 Sushi 9/11 481 534 .. 1 64 [] 54.8 1.9e-12 Sushi 10/11 542 596 .. 1 64 [] 44.4 2.6e-09 Keratin_B2 1/1 477 605 .. 1 177 [] -68.6 0.24 Sushi 11/11 601 656 .. 1 64 [] 45.5 1.2e-09 Alignments of top-scoring domains: Sushi: domain 1 of 11, from 6 to 59: score 65.8, E = 9.5e-16 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p +i NG++s ++y dtv+y+Cn+G+rlvG s+ C+ mKIAA1890 6 CGSPDPIVNGHISGD--GFSY--RDTVVYQCNPGFRLVGTSVRICLQ 48 dggGgWsppllgelPkC<-* d +Ws+++ P+C mKIAA1890 49 D--HKWSGQT----PVC 59 Sushi: domain 2 of 11, from 64 to 117: score 69.7, E = 6e-17 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p+++ +G + ++ +d v++tC++GYrl+G s+++C+ mKIAA1890 64 CGHPGNPAHGLTNGT--EFNL--NDLVNFTCHTGYRLQGASRAQCRS 106 dggGgWsppllgelPkC<-* + G+Ws+pl P+C mKIAA1890 107 N--GQWSSPL----PIC 117 Sushi: domain 3 of 11, from 122 to 180: score 58.3, E = 1.7e-13 *->CpppPdieNGrvsss...kttyeypvGdtvtytCneGYrlvGsssit C++p+ +eN+ + +++ +++ey G++v y C++G++l Gss +t mKIAA1890 122 CSDPGSVENAVRHGQqnfPESFEY--GTSVMYHCKTGFYLLGSSALT 166 CtedggGgWsppllgelPkC<-* C++ G W+ l PkC mKIAA1890 167 CMAS--GLWDRSL----PKC 180 Sushi: domain 4 of 11, from 185 to 238: score 53.5, E = 4.7e-12 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p+++ N+ + + ++y G tv+y+C+ G l G+s+ +C+e mKIAA1890 185 CGHPGVPANAVLTGE--LFTY--GATVQYSCKGGQILTGNSTRVCQE 227 dggGgWsppllgelPkC<-* d ++Ws+ l P C mKIAA1890 228 D--SHWSGSL----PHC 238 Sushi: domain 5 of 11, from 246 to 299: score 49.2, E = 9e-11 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p+++ +G+ +++ ++ ++++C+ G +l+Gs++ tC+ mKIAA1890 246 CGDPGTPAHGSRLGD--EFKT--KSLLRFSCEMGHQLRGSAERTCLV 288 dggGgWsppllgelPkC<-* + G+Ws+ P+C mKIAA1890 289 N--GSWSGVQ----PVC 299 Sushi: domain 6 of 11, from 304 to 358: score 40.1, E = 5e-08 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p+++ NG + ss + ++v y C eGY ++G + +Ct+ mKIAA1890 304 CGNPGTPTNGMILSSDGILFS---SSVIYACWEGYKTSGLMTRHCTA 347 dggGgWsppllgelPkC<-* + G+W+++ P C mKIAA1890 348 N--GTWTGTA----PDC 358 Sushi: domain 7 of 11, from 363 to 418: score 58.8, E = 1.2e-13 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvG..sssitC C++p++++NG + +++ + tv+y+Cn+GY ++ ++s++i+C mKIAA1890 363 CGDPGTLPNGIQFGT--DFTF--NKTVSYQCNPGYLMEPptSPTIRC 405 tedggGgWsppllgelPkC<-* t+d G+W++ + P C mKIAA1890 406 TKD--GTWNQSR----PLC 418 Sushi: domain 8 of 11, from 423 to 476: score 53.2, E = 5.7e-12 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C +pP+++NG+v+ s ++ G +++y+C +GY+l++s+ + C + mKIAA1890 423 CNQPPPVPNGKVEGS--DFRW--GASISYSCVDGYQLSHSAILSCEG 465 dggGgWsppllgelPkC<-* G W ++ P+C mKIAA1890 466 R--GVWKGEV----PQC 476 Sushi: domain 9 of 11, from 481 to 534: score 54.8, E = 1.9e-12 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p+++ Gr s + ++++ ++ v +C++ ++lvGss+ tC++ mKIAA1890 481 CGDPGTPAEGRLSGK--SFTF--KSEVFIQCKPPFVLVGSSRRTCQA 523 dggGgWsppllgelPkC<-* d G Ws+ P+C mKIAA1890 524 D--GIWSGIQ----PTC 534 Sushi: domain 10 of 11, from 542 to 596: score 44.4, E = 2.6e-09 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte Cp P ++ +++s++ ye+ G+tv ++C++GY+++Gs++ tC++ mKIAA1890 542 CP-DPGTPHFGIQNSSKGYEV--GSTVFFRCRKGYHIQGSTTRTCLA 585 dggGgWsppllgelPkC<-* + +Ws+ +C mKIAA1890 586 N--LTWSGIQ----TEC 596 Keratin_B2: domain 1 of 1, from 477 to 605: score -68.6, E = 0.24 *->qtScCGfptCStlgtrPsCGsscCQPsCCeSCCQpsCcqpSCCqPtc + +CG p g r s G s+ + +q C+P mKIAA1890 477 LPVFCGDPGTPAEG-RLS-GKSFTFK-------SEVFIQ---CKP-- 509 sqtscCqPtcfqs.....sCCrPsCcqTSCCqPtCcqsssCqtgC.gigG P f+ +++++ C+ + S qPtC ++ t C+ +g mKIAA1890 510 -------P--FVLvgssrRTCQADGIW-SGIQPTCIDPA--HTACpDPG- 546 siGyGQeGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqpvsa P + +++ ++ C + ++ mKIAA1890 547 --------------------TPHFGIQNSSKGYEVGSTVFFR-CRKGYHI 575 QasCCRPsCqPyCgqsCCRPaCccsvtCtrTccePc<-* Q s R + + s ++ C + c +P mKIAA1890 576 QGSTTRTCLANLTW-SGIQTECIPH-----ACRQPE 605 Sushi: domain 11 of 11, from 601 to 656: score 45.5, E = 1.2e-09 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitCt C +p ++ +++v+ + + G t++ytC++G+ l G+s++ tC mKIAA1890 601 CRQPETPAHADVRAI-DLPAF--GYTLVYTCHPGFFLAGgSEHRTCK 644 edggGgWsppllgelPkC<-* +d +W++ P+C mKIAA1890 645 AD--MKWTGKS----PVC 656 //