hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15934/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1888  ( 609 res)   mbg15934

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ABC_tran ABC transporter                                152.4    7.7e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ABC_tran   1/1     293   476 ..     1   206 []   152.4  7.7e-42

Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 293 to 476: score 152.4, E = 7.7e-42
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls
                      Ge+++l+GpNGaGKST ++++ G  + P  t+G+i + +    + ++
   mKIAA1888   293    GEILGLLGPNGAGKSTVINTLVGDVE-P--TSGKIFLGDYGSHSSED 336  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa
                    e +++    g++pQ + l+  p lT++e+  +++  kg++  +     +
   mKIAA1888   337 DESIKC---MGYCPQTNPLW--PDLTLQEHFEIYGAVKGMSPGD-----M 376  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   darveeaLervGladlldrlpqglDtlgdgggtLSGGqkQRvalARaLlt
                   ++ +  + + + l+++l++ +          + L  G k++++ A  +l 
   mKIAA1888   377 KEVISRITKALDLKEHLQKTV----------KKLPAGIKRKLCFALSMLG 416  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxx
                   kpklLlLDEPTagLDpasraqllellrelrqr.ggtvllitHdlefvdrl
                   +p + lLDEP +g Dp +++++++++r   +++ ++ ll+tH +e+++ +
   mKIAA1888   417 NPQVTLLDEPSTGMDPRAKQHMWRAIRTAFKNkKRAALLTTHYMEEAEAV 466  

                RF xxxxxxxxxx   
                   adrilvlenG<-*
                   +dr++++  G   
   mKIAA1888   467 CDRVAIMVSG    476  

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