hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meh/meh00658/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1885  ( 1086 res)   meh00658

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
tRNA-synt_1 tRNA synthetases class I (I, L, M and V)    673.0   1.5e-198   1
Anticodon_1 Anticodon-binding domain                    108.8    1.1e-28   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
tRNA-synt_1   1/1     135   759 ..     1   735 []   673.0 1.5e-198
Anticodon_1   1/1     803   959 ..     1   176 []   108.8  1.1e-28

Alignments of top-scoring domains:
tRNA-synt_1: domain 1 of 1, from 135 to 759: score 673.0, E = 1.5e-198
                   *->kvlqfWeeqdyFkpsldenkk.kekekFvildgPPYatGrlHmGHal
                      +++q+W  +++Fkp+  ++  +   e+F+  ++PP++tG+lH+GHal
   mKIAA1885   135    AWYQWWVREGFFKPEYQARLPqATGETFSMCIPPPNVTGSLHIGHAL 181  

                   nktlkDiiiRykrMqGfnVlylpGWDhhGLPiEqkVekklgakekkdrkk
                      ++D ++R++rM+G  Vl+ pG Dh+G++++++Vek+l+++++  r++
   mKIAA1885   182 TVAIQDALVRWHRMRGDRVLWIPGSDHAGIATQAVVEKQLWKEQRVRRHE 231  

                   lGreeFrekcrewameyiaeirsqfkrLGvwvDWdreyfRTldpeyekav
                   l+re F + +++w+ e ++ei +q+  LG ++DWdre f T+d + ++av
   mKIAA1885   232 LSREDFLRAVWQWKHEKGGEIYEQLCALGASLDWDRECF-TMDAGSSAAV 280  

                   wwvFveLykKGLvYrgekvVnWcpaleTALsnaEVeykdkeVkdpsihVa
                    ++Fv+Ly+ GL+Yr   +VnW+  l++A+s++EVe       + ++++ 
   mKIAA1885   281 TEAFVRLYNSGLLYRNRQLVNWSCTLRSAISDIEVESRPLP--G-RTVLQ 327  

                   fpladddlkaaflgvvdkdtsiviWTTTPWTLPaNlAlavnpdfdYvadg
                    p+                   v+++++             +  + + dg
   mKIAA1885   328 LPGCPT---------------PVSFGLL-------------ASVAFPVDG 349  

                   kdgqeylIlAtervetmlgdtgvavhltVytpidetykGseLeglkarhP
                     +   +++ t+r+et+ gd +vavh     p+d++y++  L+g    hP
   mKIAA1885   350 LPD-TEIVVGTTRPETLPGDVAVAVH-----PDDPRYTH--LHGRQLHHP 391  

                   fvdrakvveqkadaveipiiaDdyVtmefGTGaVkiAPAHgedDYkvGln
                   + +              p i+D  V    GTGaVk++PAH + D + G  
   mKIAA1885   392 LTGQ-----------LLPLITDTTVQPHVGTGAVKVTPAHSPIDAEMG-- 428  

                   nikrygLevinpvdGeedGvftenAgpyqtyseevpdFvGmkrfdAdkki
                      r+gL ++ ++   edG++t  +g   +         G++rf A++ki
   mKIAA1885   429 --TRHGLTPLSVIA--EDGTMTSLCGDWLQ---------GLHRFVAREKI 465  

                   velLkekGlLlkkekilhsyPfcwRsdegtpliyratpQWFVrmdelnlG
                      L+e+Gl+   + + +  P c Rs  g++++y+++ QWFVr +e+   
   mKIAA1885   466 MCTLRERGLFRGLQEHPMVLPICSRS--GDVVEYLLKSQWFVRCQEM--- 510  

                   rTLaddalkavekgkvqwvPewgeEkrygnWleNirDWcISRQRyWGtPI
                      +d+a kave g  +  P++ + k   +W + i DWc+SRQ++WG++I
   mKIAA1885   511 ---GDRAAKAVESGALELWPSFHQ-KSWQHWFAHIGDWCVSRQLWWGHQI 556  

                   PlwvsedgeevvvvgsdkELpelvaarneedPGveSPielhrawvdlta.
                   P++++  ++ +     d+  + +v++r e +         +ra + + ++
   mKIAA1885   557 PAYRVIGENAE-----DDRKECWVVGRSEAE---------ARAVAAKRTg 592  

                   ...keslpnGkkkgtlerdeDVLDtWFdSGswpfatlgyPfekdglldte
                   ++++e+        tlerd+DVLDtWF+S++ pf+ lg+P+e    +  +
   mKIAA1885   593 rpeAEL--------TLERDPDVLDTWFSSALFPFSALGWPRE----T--P 628  

                   afekwfPaDmyleGsDqAvlHLlrgWFysllllgtalvgskvPykevLvh
                   ++ +++P   +++GsD      l +W+ ++ +lgt l+g + P+ +vL h
   mKIAA1885   629 DLARFYPLTLLETGSDL-----LMFWVGRMVMLGTQLTG-QLPFSKVLLH 672  

                   GlvlDDAFYYveqGrRWVMKMSKSkGNvidPldvieGI.LeDLhaKllgg
                   ++v+D       qGr    KMSKS+GNv dP d+i G +L  L aKl  g
   mKIAA1885   673 SMVRD------RQGR----KMSKSLGNVLDPRDIISGQeLQVLQAKLRDG 712  

                   nlqpqeveKa.k.qkk.FpnGIpkyGADaLRlyLlsssppgqdiafs<-*
                   nl+p e + a   qkk+Fp GIp++G+DaLR++L+s   +g d+ +s   
   mKIAA1885   713 NLDPGELAVAaAaQKKdFPYGIPECGTDALRFALCSHGILGGDLHLS    759  

Anticodon_1: domain 1 of 1, from 803 to 959: score 108.8, E = 1.1e-28
                   *->DrWiLsrLnelikevteayenYdFnkAaralyeFiwndlcdwYlels
                      D WiLsrL+ ++ e  + + + +++ ++++ly+F+ + lcd+Yle +
   mKIAA1885   803    DAWILSRLAFAASECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAV 849  

                   KdrlygeeeegensdadddKseapakraAqttLyevLeallrLLaPfmPF
                   K++l + ++       +++  ++        +L+ + ++ lrLLaP mPF
   mKIAA1885   850 KPVLSSVPRP------PGP--PQ--------VLFSCADVGLRLLAPLMPF 883  

                   itEEiWqrLpg.....eeeSvhladwPvdelevdgfgevkewelidl.ek
                   ++EE+WqrLp++++++ + S+++a++P     ++        +l+  ++ 
   mKIAA1885   884 LAEELWQRLPPrpggpLAPSICVAPYP----SAR--------SLVSYgQG 921  

                   lea....emellkevikaiRslRaeknikpslplkvliv<-*
                     ++++ +++ ++ v  a+R+lRa + +  +++  vl+    
   mKIAA1885   922 SGKqgglLRAEVVTVLQALRALRATYQL-TKARPQVLLQ    959  

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