hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mib/mib34059/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1884 ( 1806 res) mib34059 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CUB Domain first found in C1r, C1s, uEGF, and bo 827.2 3.3e-244 8 CCP Domain abundant in complement control protei 641.2 3.4e-188 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CUB 1/8 34 142 .. 1 144 [] 97.0 2.2e-24 CCP 1/13 147 203 .. 1 79 [] 59.8 3.5e-13 CUB 2/8 207 316 .. 1 144 [] 104.3 1.4e-26 CCP 2/13 321 377 .. 1 79 [] 48.3 1e-09 CUB 3/8 381 489 .. 1 144 [] 140.7 1.5e-37 CCP 3/13 494 551 .. 1 79 [] 51.3 1.2e-10 CUB 4/8 555 663 .. 1 144 [] 89.8 3.3e-22 CCP 4/13 671 728 .. 1 79 [] 49.4 4.8e-10 CUB 5/8 732 840 .. 1 144 [] 122.6 4.3e-32 CCP 5/13 845 900 .. 1 79 [] 57.9 1.3e-12 CUB 6/8 904 1012 .. 1 144 [] 114.9 8.8e-30 CCP 6/13 1017 1072 .. 1 79 [] 67.5 1.6e-15 CUB 7/8 1076 1187 .. 1 144 [] 95.7 5.3e-24 CCP 7/13 1188 1245 .. 1 79 [] 61.1 1.4e-13 CUB 8/8 1250 1360 .. 1 144 [] 91.9 7.5e-23 CCP 8/13 1362 1420 .. 1 79 [] 47.7 1.5e-09 CCP 9/13 1425 1482 .. 1 79 [] 58.0 1.2e-12 CCP 10/13 1487 1547 .. 1 79 [] 40.9 1.7e-07 CCP 11/13 1552 1605 .. 1 79 [] 55.5 6.6e-12 CCP 12/13 1610 1663 .. 1 79 [] 61.5 1.1e-13 CCP 13/13 1668 1721 .. 1 79 [] 61.4 1.1e-13 Alignments of top-scoring domains: CUB: domain 1 of 8, from 34 to 142: score 97.0, E = 2.2e-24 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CG ++t+++ Gt+ SPn+P + Y+nn eC++ I++ pG mKIAA1884 34 CGNSVTGTQ------GTLLSPNFPVN-----YNNNHECIYSIQTQPG 69 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + i+Lk F+l D +++yDG + +s++llG mKIAA1884 70 KGIQLKAKA---FELAEG--------------DLLKVYDGTN-NSARLLG 101 ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa f+ se + ++ s+ s+s+++ F +D ++ ++GF++++s+ mKIAA1884 102 ----VFSRSEmlgVtLNST-SSSLWLDFITDAENT-----SKGFELQFSS 141 v<-* + mKIAA1884 142 F 142 CCP: domain 1 of 13, from 147 to 203: score 59.8, E = 3.5e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +++ G+ + g + Gs+vt+sC+pGY+l+ mKIAA1884 147 CEdPG---TPQFGYKVHD---------GGHFAGSSVTFSCDPGYSLR 181 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G s+++ C+s+++++W+ p PtC mKIAA1884 182 G-----------SEELMCLSGerrtWDRPL----PTC 203 CUB: domain 2 of 8, from 207 to 316: score 104.3, E = 1.4e-26 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGgt++++ s G + SP+YP + Y+ nl+C+WtI+a G mKIAA1884 207 CGGTVRGEVS-----GQVLSPGYPAP-----YEHNLNCIWTIEADAG 243 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ++i L+F Fd+E D + i+DGp +s+ ll mKIAA1884 244 CTIGLHFLV---FDTEE-------------VHDVLRIWDGPV-ESGVLLK 276 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< ++G++ p+ + S+ Ns+ ++F++D+ ++ k+GF +++s mKIAA1884 277 ----ELSGPMlPkDLHSTFNSVVLQFSTDFFTS-----KQGFAIQFSVS 316 -* mKIAA1884 - - CCP: domain 2 of 13, from 321 to 377: score 48.3, E = 1e-09 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +++nG+ ++ ++ + G++ ++C+pGY l+ mKIAA1884 321 CNdPG---VPQNGSRSG----------DSWEAGDSTVFQCDPGYALQ 354 GgsqpekSrestsstitCtsn.....WspppsgplPtC<-* G s++i C +++ W p+p PtC mKIAA1884 355 G-----------SAEISCVKIqnrffWQPSP----PTC 377 CUB: domain 3 of 8, from 381 to 489: score 140.7, E = 1.5e-37 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+lt++s G+i SPnYP++ Yp+++eC W +++ p mKIAA1884 381 CGGDLTGPS------GVILSPNYPEP-----YPPGKECDWKVTVSPD 416 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG y+i L F F+lE+ +yD++ iyDG++ spl+G mKIAA1884 417 YVIALVFNT---FNLEP-------------GYDFLHIYDGRD-SLSPLIG 449 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< f Gs+ p+ i SssNs+++ F+sD sv+ + GF + Y+ + mKIAA1884 450 ----SFYGSQlPsRIESSSNSLFLAFRSDASVS-----NAGFVIDYTEN 489 -* mKIAA1884 - - CCP: domain 3 of 13, from 494 to 551: score 51.3, E = 1.2e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +P+ +i+nG+ ++s+ + Gs+vty C+ GY+ mKIAA1884 494 CFdPG---SIKNGTRVGSD----------LKLGSSVTYYCHGGYEVE 527 GgsqpekSrestsstitCtsn......WspppsgplPtC<-* G st+ C+ ++++++ W++p P C mKIAA1884 528 G-----------ASTLSCILGpdgkpmWNNPR----PVC 551 CUB: domain 4 of 8, from 555 to 663: score 89.8, E = 3.3e-22 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg +s+ G++ SPnYP++ Y ++++C + +++p+ mKIAA1884 555 CGGQYVGSD------GVVLSPNYPQN-----YTSGQTCLYFVTVPKD 590 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG y++ +F F++ + D ve++DG+s ++s+ll mKIAA1884 591 YVVFGQFAF---FHTALN--------------DIVEVHDGYS-QHSRLLS 622 ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa ++Gs ++++ + + sN+++++F+ + v+ +rGF+ Y+a mKIAA1884 623 ----SLSGSHtgeSlPLAT-SNQVLIKFSAKGQVS-----ARGFHFVYQA 662 v<-* v mKIAA1884 663 V 663 CCP: domain 4 of 13, from 671 to 728: score 49.4, E = 4.8e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++ p ++ +G+ +s+ +s+G ++++Cn+GY l+ mKIAA1884 671 CSsVP---EPRYGKRLGSD----------FSVGAIIRFECNSGYALQ 704 GgsqpekSrestsstitCtsn......WspppsgplPtC<-* G s++i+C++ ++ +W+ + PtC mKIAA1884 705 G-----------SPEIECLPVpgalaqWNVSA----PTC 728 CUB: domain 5 of 8, from 732 to 840: score 122.6, E = 4.3e-32 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+lt+ Gti SP++P++ Y n+l+CvW I +p+G mKIAA1884 732 CGGNLTERR------GTILSPGFPEP-----YLNSLNCVWKIMVPEG 767 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG i+++ + F +E +D +e++DG + ++ ++lG mKIAA1884 768 AGIQIQVIS---FVTEQ-------------NWDSLEVFDGAD-NTVTMLG 800 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< f+G++ p ++ S+sN+++++F sD sv+ + GF++ Y +v mKIAA1884 801 ----SFSGTTvPaLLNSTSNQLYLHFYSDISVS-----AAGFHLEYKTV 840 -* mKIAA1884 - - CCP: domain 5 of 13, from 845 to 900: score 57.9, E = 1.3e-12 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv Cp+P ++ nG t+ + y ++++v+++C+pGY l+ mKIAA1884 845 CPePA---VPSNGVKTGER----------YLVNDVVSFQCEPGYALQ 878 GgsqpekSrestsstitCtsn....WspppsgplPtC<-* G ++i C++++ ++W+ pp P C mKIAA1884 879 G-----------HAHISCMPGtvrrWNYPP----PLC 900 [output cut off at A = 10 top alignments] //