hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mib/mib34059/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1884 ( 1806 res) mib34059 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CUB CUB domain 765.0 3e-226 8 Sushi Sushi domain (SCR repeat) 540.0 1.6e-158 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CUB 1/8 34 139 .. 1 116 [] 89.5 7e-23 Sushi 1/13 147 203 .. 1 64 [] 50.0 5.3e-11 CUB 2/8 207 313 .. 1 116 [] 84.9 1.7e-21 Sushi 2/13 321 377 .. 1 64 [] 34.6 2.3e-06 CUB 3/8 381 486 .. 1 116 [] 152.1 9.5e-42 Sushi 3/13 494 551 .. 1 64 [] 46.0 8.3e-10 CUB 4/8 555 660 .. 1 116 [] 65.9 8.6e-16 Sushi 4/13 671 728 .. 1 64 [] 34.2 2.9e-06 CUB 5/8 732 837 .. 1 116 [] 114.3 2.3e-30 Sushi 5/13 845 900 .. 1 64 [] 48.7 1.3e-10 CUB 6/8 904 1009 .. 1 116 [] 104.1 2.7e-27 Sushi 6/13 1017 1072 .. 1 64 [] 54.8 1.9e-12 CUB 7/8 1076 1180 .. 1 116 [] 95.9 8.1e-25 Sushi 7/13 1188 1245 .. 1 64 [] 47.8 2.3e-10 CUB 8/8 1249 1357 .. 1 116 [] 79.8 5.4e-20 Sushi 8/13 1362 1420 .. 1 64 [] 39.8 6.1e-08 Sushi 9/13 1425 1482 .. 1 64 [] 47.2 3.5e-10 Sushi 10/13 1487 1547 .. 1 64 [] 44.9 1.8e-09 Sushi 11/13 1552 1605 .. 1 64 [] 51.6 1.7e-11 Sushi 12/13 1610 1663 .. 1 64 [] 56.3 6.7e-13 Sushi 13/13 1668 1721 .. 1 64 [] 61.5 1.8e-14 Alignments of top-scoring domains: CUB: domain 1 of 8, from 34 to 139: score 89.5, E = 7e-23 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CG +t++ G++ SPn+P +Y++n eC++ I+++pg+ ++L+ mKIAA1884 34 CGNS--VTGTQGTLLSPNFPV-NYNNNHECIYSIQTQPGKG-IQLKA 76 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm F+l D ++++DG +s+ llG f + + ++ Sts+++ mKIAA1884 77 KAFELA------EGDLLKVYDGTNNSARLLGVFSRSEMLGVTLNSTSSSL 120 likFvsDasvqkrGFkAty<-* ++ F++Da+++++GF + + mKIAA1884 121 WLDFITDAENTSKGFELQF 139 Sushi: domain 1 of 13, from 147 to 203: score 50.0, E = 5.3e-11 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C +p+++++G+ ++ ++ + ++vt++C++GY+l+Gs++++C+ mKIAA1884 147 CEDPGTPQFGYKVHDGGHFAG---SSVTFSCDPGYSLRGSEELMCLS 190 dgg.GgWsppllgelPkC<-* + + +W+ pl P+C mKIAA1884 191 G-ErRTWDRPL----PTC 203 CUB: domain 2 of 8, from 207 to 313: score 84.9, E = 1.7e-21 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CGgt+ e sG SP+YP +Y+ n++C+W+I+a+ g + + L+F mKIAA1884 207 CGGTV-RGEVSGQVLSPGYPA-PYEHNLNCIWTIEADAGCT-IGLHF 250 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm + Fd+E + D++ i+DG+ +s+ ll G +P d+ St n++ mKIAA1884 251 LVFDTE---E-V-HDVLRIWDGPVESGVLLKELSG-PMLPKDLHSTFNSV 294 likFvsDasvqkrGFkAty<-* + F +D +k GF++ + mKIAA1884 295 VLQFSTDFFTSKQGFAIQF 313 Sushi: domain 2 of 13, from 321 to 377: score 34.6, E = 2.3e-06 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C +p++++NG+ s + e Gd+ +++C++GY l+Gs++i C++ mKIAA1884 321 CNDPGVPQNGSRSGD--SWEA--GDSTVFQCDPGYALQGSAEISCVK 363 dgg.GgWsppllgelPkC<-* + W p + P+C mKIAA1884 364 IQNrFFWQPSP----PTC 377 CUB: domain 3 of 8, from 381 to 486: score 152.1, E = 9.5e-42 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CGg+ lt++sG+i SPnYP+ +Ypp keC+W +++ p y + L F mKIAA1884 381 CGGD--LTGPSGVILSPNYPE-PYPPGKECDWKVTVSPDYV-IALVF 423 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm F+lE +yD++ i+DG++s spl+G+f G s++P i S+sn++ mKIAA1884 424 NTFNLE-----PGYDFLHIYDGRDSLSPLIGSFYG-SQLPSRIESSSNSL 467 likFvsDasvqkrGFkAty<-* ++ F sDasv+++GF ++y mKIAA1884 468 FLAFRSDASVSNAGFVIDY 486 Sushi: domain 3 of 13, from 494 to 551: score 46.0, E = 8.3e-10 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C +p+ i NG+ + s + G++vty+C+ GY+ +G s++ C+ mKIAA1884 494 CFDPGSIKNGTRVGS--DLKL--GSSVTYYCHGGYEVEGASTLSCIL 536 dg.g.GgWsppllgelPkC<-* + +g+ W++p+ P+C mKIAA1884 537 GPdGkPMWNNPR----PVC 551 CUB: domain 4 of 8, from 555 to 660: score 65.9, E = 8.6e-16 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CGg+ + +s+G+ SPnYP +Y + C + +++p+ y V+ +F mKIAA1884 555 CGGQ--YVGSDGVVLSPNYPQ-NYTSGQTCLYFVTVPKDYV-VFGQF 597 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedi.rStsnr F++ D vE+ DG++ +s ll + G s+ e ++ tsn+ mKIAA1884 598 AFFHTA------LNDIVEVHDGYSQHSRLLSSLSG-SHTGESLpLATSNQ 640 mlikFvsDasvqkrGFkAty<-* +likF + v++rGF+ y mKIAA1884 641 VLIKFSAKGQVSARGFHFVY 660 Sushi: domain 4 of 13, from 671 to 728: score 34.2, E = 2.9e-06 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C+++P+++ G+ s +++ G ++++Cn GY l+Gs++i C++ mKIAA1884 671 CSSVPEPRYGKRLGS--DFSV--GAIIRFECNSGYALQGSPEIECLP 713 dg.g.GgWsppllgelPkC<-* + +W+ P+C mKIAA1884 714 VPgAlAQWNVSA----PTC 728 CUB: domain 5 of 8, from 732 to 837: score 114.3, E = 2.3e-30 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CGg+ lte G+i SP++P+ +Y ++++CvW I +p+g ++++ mKIAA1884 732 CGGN--LTERRGTILSPGFPE-PYLNSLNCVWKIMVPEGAG-IQIQV 774 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm +F +E ++D++E++DG +++ + lG+f G P+ + Stsn++ mKIAA1884 775 ISFVTE-----QNWDSLEVFDGADNTVTMLGSFSG-TTVPALLNSTSNQL 818 likFvsDasvqkrGFkAty<-* + F+sD sv+++GF++ y mKIAA1884 819 YLHFYSDISVSAAGFHLEY 837 Sushi: domain 5 of 13, from 845 to 900: score 48.7, E = 1.3e-10 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte Cp+p ++ NG + + y + +d+v+++C++GY l+G+++i C++ mKIAA1884 845 CPEPAVPSNGVKTGE--RYLV--NDVVSFQCEPGYALQGHAHISCMP 887 dgg.GgWsppllgelPkC<-* + + +W+ p+ P C mKIAA1884 888 G-TvRRWNYPP----PLC 900 CUB: domain 6 of 8, from 904 to 1009: score 104.1, E = 2.7e-27 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CGg + e+ G+i SP++P +Yp n++C W I++p g+ +++F mKIAA1884 904 CGGA--VEEMEGVILSPGFPG-NYPSNMDCSWKISLPVGFG-AHIQF 946 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm + F +E + D++Eir G++++s +Grf G s++P+ + Sts+ mKIAA1884 947 LNFSTE-----PNHDFLEIRSGPSETSRMMGRFSG-SELPGSLLSTSHDS 990 likFvsDasvqkrGFkAty<-* + F+sD s ++ GFk+ y mKIAA1884 991 IVYFHSDHSQNRPGFKLEY 1009 Sushi: domain 6 of 13, from 1017 to 1072: score 54.8, E = 1.9e-12 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte Cp+p ++ NG v+ y + G++vt++C++GY+l G +++tC++ mKIAA1884 1017 CPDPEPFANGIVRGA--GYNV--GQSVTFECLPGYQLTGQPVLTCQH 1059 dgg.GgWsppllgelPkC<-* + ++ +W++pl P+C mKIAA1884 1060 G-TnRNWDHPL----PRC 1072 CUB: domain 7 of 8, from 1076 to 1180: score 95.9, E = 8.1e-25 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF CGg+ +t+ +G+ +SP+YP +Y+ +++CvW+I++p g+ V+L+ mKIAA1884 1076 CGGN--ITSFNGTVYSPGYPS-PYSSSQDCVWQITVPIGHG-VHLNL 1118 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm + +E Dy+ ++DG+ +s lG f +s S+sn++ mKIAA1884 1119 SLLQIE-----PFGDYITVWDGPQQTSLQLGVFT-RSLSKKIAHSSSNQV 1162 likFvsDasvqkrGFkAty<-* l+kF++ ++ +++ F++ + mKIAA1884 1163 LLKFHR-DTATGGIFAIAF 1180 Sushi: domain 7 of 13, from 1188 to 1245: score 47.8, E = 2.3e-10 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte Cppp ++N++v+++++++ Gd v+y+C++G++lvGs+ +tC mKIAA1884 1188 CPPPTILPNAEVVTENEEFNI--GDIVRYRCLPGFTLVGSEILTCKL 1232 dgg.GgWsppllgelPkC<-* + + + +p+ P+C mKIAA1884 1233 G-TyLQFEGPP----PIC 1245 CUB: domain 8 of 8, from 1249 to 1357: score 79.8, E = 5.4e-20 *->CGgtldltessGsitSPnYPnrdYppnkeCvWrIrappgyrvVeLtF C + +lt+s+G+i S YP +Yp+ + C W++r++p+y+ +++t mKIAA1884 1249 CPTNELLTDSTGVILSQSYPG-SYPQFQTCSWLVRVEPEYN-ISITV 1293 qdFdlEdhdgaCryDyvEirDGdpssspllGrfCGgsgpPedirStsnrm ++F E +yD Ei+DG+++ spll G++ +P ++S+sn++ mKIAA1884 1294 EYFLSEK-----QYDEFEIFDGPSGQSPLLKALSGNYSAPLIVTSSSNSV 1338 likFvsDasvqkrGFkAty<-* ++ sD +++GFk++y mKIAA1884 1339 YLRWSSDHAYNRKGFKIRY 1357 Sushi: domain 8 of 13, from 1362 to 1420: score 39.8, E = 6.1e-08 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C+ p + +G++ + tt + G ++++ Cn+GYrlvG+s + Ct mKIAA1884 1362 CSLPKAPLHGFILGQ-TTTQP--GGSIHFGCNTGYRLVGHSMAICTR 1405 dg.g.GgWsppllgelPkC<-* +g Ws ++ P C mKIAA1884 1406 HPqGyHLWSEAI----PLC 1420 Sushi: domain 9 of 13, from 1425 to 1482: score 47.2, E = 3.5e-10 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvG..sssitC C+ p + NG v + +y++ G++++y+CneGY+l+ + ++++ C mKIAA1884 1425 CGLPDAPKNGIVFGK--EYTV--GTKAVYSCNEGYHLQAgaEATAEC 1467 tedggGgWsppllgelPkC<-* +++ G Ws+ + P+C mKIAA1884 1468 LDT--GLWSNSNVP--PQC 1482 Sushi: domain 10 of 13, from 1487 to 1547: score 44.9, E = 1.8e-09 *->Cp..ppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssit Cp+ ++ +e+Gr++ t+y++ ++ C++GY+ G ++i+ mKIAA1884 1487 CPdiSSISVEHGRWRLIfETQYQF--QAQLMLICDPGYYYTGQRVIR 1531 CtedggGgWsppllgelPkC<-* C+++ G+Ws + P+C mKIAA1884 1532 CQAN--GRWSLGE--SMPTC 1547 Sushi: domain 11 of 13, from 1552 to 1605: score 51.6, E = 1.7e-11 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C+++P+++ G+ + + y G t+ ++Cn GY+lvGs++ C++ mKIAA1884 1552 CGELPTPPSGHRIGT--MSVY--GATAIFSCNSGYTLVGSRVRECMA 1594 dggGgWsppllgelPkC<-* + G Ws+ + ++C mKIAA1884 1595 N--GLWSGSE----VRC 1605 Sushi: domain 12 of 13, from 1610 to 1663: score 56.3, E = 6.7e-13 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C+ p +i NG++ + ++ y +v+y+C+ G+rl+G s+ C+ mKIAA1884 1610 CGTPEPIVNGHINGE--NFNY--RGSVVYQCRAGFRLIGMSVRICQQ 1652 dggGgWsppllgelPkC<-* d +Ws+ + P C mKIAA1884 1653 D--HHWSGKT----PFC 1663 Sushi: domain 13 of 13, from 1668 to 1721: score 61.5, E = 1.8e-14 *->CpppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCte C++p+++ NG + s ++ +d+v + Cn+GY +G ++++C++ mKIAA1884 1668 CGHPGNPVNGLTQGS--QFNL--NDVVKFICNPGYIAEGAARSQCLA 1710 dggGgWsppllgelPkC<-* G+Ws +l P+C mKIAA1884 1711 S--GQWSDTL----PTC 1721 //