hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00027/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1878  ( 311 res)   mfj00027

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
STOP     STOP protein                                   316.9    2.4e-91   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
STOP       1/1       1   311 []     1   661 []   316.9  2.4e-91

Alignments of top-scoring domains:
STOP: domain 1 of 1, from 1 to 311: score 316.9, E = 2.4e-91
                   *->mAWPCitRACCiARFWnqLDKADiAvPLvFtKYsEAtEqpgappqpp
                                                                     
   mKIAA1878     -    ----------------------------------------------- -    

                   apPlPaliPrsaAvaietqPaqgesdavaratgpapgpsGdderAAagGd
                                                                     
   mKIAA1878     - -------------------------------------------------- -    

                   aalGlaaastatsGsgPADsvmRqDYkaWKvqRPEPsCkPksEYqPsDaP
                                          qDY+aWKvqRPEPsC+P+sEYqPsDaP
   mKIAA1878     1 -----------------------QDYRAWKVQRPEPSCRPRSEYQPSDAP 27   

                   FEkEtqYqKDFRAWPlPkRGDHPWiPKpvqipatsagssPvLGmekrrPe
                   FE+EtqYqKDFRAWPlP+RGDHPWiPKpvqipats++s PvLG +krrP+
   mKIAA1878    28 FERETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQ 77   

                   kqergpiqlsadardpegaggagvpaagkasgadqrdtrrkagpawmvtr
                   +qergp+qlsadardpegaggagv aagkasg dqrdtrrkagpawmvtr
   mKIAA1878    78 SQERGPMQLSADARDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTR 127  

                   tegheekplppaqsqtqeggpaagkasgadqrdtrrkagpawmvtrteaq
                    egheekplppaqsqtqeggpaagkasgadqrdtrrkagpawmvtr+e++
   mKIAA1878   128 NEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRSEGH 177  

                   EkkrkkeeeaeadEegPkAakasdAdekdrrRkagpawmvtrtegheekp
                   E+k++++++++++E+gP+A+kas+Ad++d+rR                  
   mKIAA1878   178 EEKPLPPAQSQTQEGGPAAGKASGADQRDTRR------------------ 209  

                   lppaqsqtqeggpaagkasgadqrdtrrkagpawmvtrtegheetplppa
                                                                     
   mKIAA1878     - -------------------------------------------------- -    

                   qsqtqeggpaagkasgadqrdtrrkagpawmvtrtegheetplppaqsqt
                                           kagpawmvtrtegheetplppaqsqt
   mKIAA1878   210 ------------------------KAGPAWMVTRTEGHEETPLPPAQSQT 235  

                   qeggpaagkasgaderdtrrkagpawmvrrsegheqttaahadeaGgeeG
                   qeggpaagkasgaderdtrrkagpawmvrrsegheqt aaha+++G+e+G
   mKIAA1878   236 QEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGG 285  

                   kGRAvADALnRqikEEvvaagvsssYRnEFRaWiDvKPvKaiKAKaqYKP
                   kGRAvADALnRqi+EEv ++ vsssYR                       
   mKIAA1878   286 KGRAVADALNRQIREEVAST-VSSSYR----------------------- 311  

                   PeeKmvHEtsYsAqFKGEasKPatADnKvleRRRiRsLYsEPyKEsPKvE
                                                                     
   mKIAA1878     - -------------------------------------------------- -    

                   KPsvkssKPKKtstsqKPLkKAKDKqvAsGrAAKKKsaEsssaaKPeDKE
                                                                     
   mKIAA1878     - -------------------------------------------------- -    

                   ksKEmnnKLAEAKE<-*
                                    
   mKIAA1878     - --------------    -    

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