hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03373/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1877  ( 219 res)   mpm03373

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Glyco_transf_29 Glycosyltransferase family 29 (sialyl   -66.9      0.034   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Glyco_transf_29   1/1       1   196 [.     1   327 []   -66.9    0.034

Alignments of top-scoring domains:
Glyco_transf_29: domain 1 of 1, from 1 to 196: score -66.9, E = 0.034
                   *->CrrkfslaCvFlckwalfrslfnlslpvLlrkapataaLwstlsqkk
                                                                    +
   mKIAA1877     1    ----------------------------------------------Y 1    

                   tPyGlkfksekviasgltLlneeesrdLpedlrylpkqCkrCAVVGNGGI
                   +P                                l               
   mKIAA1877     2 VP--------------------------------L--------------- 4    

                   LkGSrlGaeIdaaDyVfRlNgApiseGfeeDVGtKTSFYGFTvrtvkpsl
                             d++D V+R N+Ap+  G+e+DVG+KT     Tvr+++  +
   mKIAA1877     5 ----------DSHDAVLRFNSAPT-RGYEKDVGNKT-----TVRIINSQI 38   

                   vplldlgltsvPqgqlyrviliksl.ivvwlqarsakrglpvWselvdkl
                        + +  +  + +   ++ +  +++  l + ++k           + 
   mKIAA1877    39 LANPSHHFIDSALYKDVILVAWDPApYSANLNLWYKKPDYNL---FTPYI 85   

                   qraekyFGPelspkkvyllhPdfisylteiiLqyflksglinkrfgdlyv
                   q  +ky     + + +y+lhP+fi  l  i      +  + + +    + 
   mKIAA1877    86 QHRRKY-----PTQPFYILHPKFIWQLWDI----IQENTREKIQP---NP 123  

                   pSTGlilvvtALhLCdEVslyGFitdsYCsnksklsviydH..YFerqkl
                   pS G i ++     C EV++y  i +     +  l   y H+ Y++    
   mKIAA1877   124 PSSGFIGILIMMSMCKEVHVYEYIPSV---RQTELC-HY-HelYYDA--- 165  

                   delifyalHdlslEaklllhLhkaGilkvysrt<-*
                    ++   a H l  E  ll  + + G  +++      
   mKIAA1877   166 -ACTLGAYHPLLYEK-LLVQRLNTGTQADLHHK    196  

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