hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00624/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1876  ( 348 res)   mpj00624

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET (Su(var)3-9, Enhancer-of-zeste, Trithora   159.3    3.8e-43   1
PreSET   N-terminal to some SET domains                 116.7    2.6e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PreSET     1/1      51   150 ..     1   124 []   116.7  2.6e-30
SET        1/1     166   289 ..     1   114 []   159.3  3.8e-43

Alignments of top-scoring domains:
PreSET: domain 1 of 1, from 51 to 150: score 116.7, E = 2.6e-30
                   *->llDisnGkEnvPvplVeNevDedppplPpdFeYiserivgqgvvdIl
                       +Di++G+E++P+p+V N vD + +  P +++Y+s+++v++ ++   
   mKIAA1876    51    SRDIARGYERIPIPCV-NAVDSELC--PTNYKYVSQNCVTSPMN--- 91   

                   idrspsplsgCsCvdledCsssnmskCeCarknieggefaYkelrldkee
                   idr+ ++l+ C Cvd  dCsss+   C C +++   +++++k++      
   mKIAA1876    92 IDRNITHLQYCVCVD--DCSSST---CMCGQLS--MRCWYDKDG------ 128  

                   ekkverlngglllkakpvIYECNsrCs<-*
                        rl ++++  ++p+I+ECN +Cs   
   mKIAA1876   129 -----RLLPEFNMAEPPLIFECNHACS    150  

SET: domain 1 of 1, from 166 to 289: score 159.3, E = 3.8e-43
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii...........f
                      a+l+++++   GwG+r+++dIp G+f++eyvGe+i++++ + +++++
   mKIAA1876   166    ARLQLYRTQDMGWGVRSLQDIPLGTFVCEYVGELIsdseadvreedS 212  

                   ylfd.........ciDatranggkGniarfiNHSCePNcelifvevdgfd
                   ylfd ++++++  ciDa++    +Gn++rfiNH CePN++ ++v+++++d
   mKIAA1876   213 YLFDldnkdgevyCIDARF----YGNVSRFINHHCEPNLVPVRVFMSHQD 258  

                   prgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   +r      +pri++f++r I +GE+L +dYg  +++    
   mKIAA1876   259 LR------FPRIAFFSTRLIQAGEQLGFDYGERFWDV    289  

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