hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00624/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1876  ( 348 res)   mpj00624

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     189.1    7.3e-53   1
Pre-SET  Pre-SET motif                                  114.7    1.8e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Pre-SET    1/1      53   158 ..     1   124 []   114.7  1.8e-30
SET        1/1     160   290 ..     1   261 []   189.1  7.3e-53

Alignments of top-scoring domains:
Pre-SET: domain 1 of 1, from 53 to 158: score 114.7, E = 1.8e-30
                   *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygqsviliqseW
                      Di+rg+E +pIp+v N VD++ + P +++Y++++++ +s ++i+++ 
   mKIAA1876    53    DIARGYERIPIPCV-NAVDSELC-PTNYKYVSQNCV-TSPMNIDRN- 95   

                   WSlaftsGCdCtddkgsCspadsskCaCarlsgnggaypPglfpneeydn
                     +++++ C C+d   +Cs   ss C C++ls +++           yd+
   mKIAA1876    96 --ITHLQYCVCVD---DCS---SSTCMCGQLSMRCW-----------YDK 126  

                   dgilve.....pgplIYECNsrCkCgpsCkNR<-*
                   dg+l+ + +  ++plI+ECN +C+C+++C+NR   
   mKIAA1876   127 DGRLLPefnmaEPPLIFECNHACSCWRNCRNR    158  

SET: domain 1 of 1, from 160 to 290: score 189.1, E = 7.3e-53
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      vq g +arl++++t+ +GwG+r+++dIp G+f++EY+Geli+++ea+
   mKIAA1876   160    VQNGLRARLQLYRTQDMGWGVRSLQDIPLGTFVCEYVGELISDSEAD 206  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                    re            +d     Ylfdld+                     
   mKIAA1876   207 VRE------------EDS----YLFDLDN--------------------- 219  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA1876     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                ++g+  ++iDA+ +GN++RFi
   mKIAA1876   220 -----------------------------KDGE-VYCIDARFYGNVSRFI 239  

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NH CePN++ ++vf+ ++dl             ++pri++f++r I+aGe
   mKIAA1876   240 NHHCEPNLVPVRVFMSHQDL-------------RFPRIAFFSTRLIQAGE 276  

                   ELtydYgydksnge<-*
                   +L +dYg  ++ ++   
   mKIAA1876   277 QLGFDYGERFWDVK    290  

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