hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02924/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1874  ( 435 res)   mbg02924

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    222.1    4.7e-62  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/10    157   179 ..     1    23 []    25.7   0.0062
ZnF_C2H2   2/10    185   207 ..     1    23 []    32.3  6.5e-05
ZnF_C2H2   3/10    212   234 ..     1    23 []    23.8    0.023
ZnF_C2H2   4/10    240   262 ..     1    23 []    24.9    0.011
ZnF_C2H2   5/10    268   290 ..     1    23 []    28.5  0.00094
ZnF_C2H2   6/10    296   318 ..     1    23 []    25.0    0.011
ZnF_C2H2   7/10    324   346 ..     1    23 []    30.4  0.00024
ZnF_C2H2   8/10    352   374 ..     1    23 []    30.5  0.00023
ZnF_C2H2   9/10    380   402 ..     1    23 []    28.6  0.00088
ZnF_C2H2  10/10    408   430 ..     1    23 []    33.7  2.5e-05

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 10, from 157 to 179: score 25.7, E = 0.0062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cg+ f+ ++ L+rH+rvH   
   mKIAA1874   157    HKCDE-CGELFTYRsVLIRHQRVH    179  

ZnF_C2H2: domain 2 of 10, from 185 to 207: score 32.3, E = 6.5e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksfs++ +L++H+r+H   
   mKIAA1874   185    YTCSE-CGKSFSHRaNLTKHQRTH    207  

ZnF_C2H2: domain 3 of 10, from 212 to 234: score 23.8, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C+k+f   ++L+ H+r+H   
   mKIAA1874   212    FECGE-CKKTFIESsSLEVHQRIH    234  

ZnF_C2H2: domain 4 of 10, from 240 to 262: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f++ ++L +H+ +H   
   mKIAA1874   240    YECAE-CGKGFNRStHLAQHQLIH    262  

ZnF_C2H2: domain 5 of 10, from 268 to 290: score 28.5, E = 0.00094
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f + +aL++H+r+H   
   mKIAA1874   268    YECNE-CDKAFIHSsALIKHQRTH    290  

ZnF_C2H2: domain 6 of 10, from 296 to 318: score 25.0, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk fs+ ++L++H+rvH   
   mKIAA1874   296    YKCQD-CGKAFSHCsSLTKHQRVH    318  

ZnF_C2H2: domain 7 of 10, from 324 to 346: score 30.4, E = 0.00024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+ ++L++H+r+H   
   mKIAA1874   324    YECSE-CGKTFSQStHLVQHQRIH    346  

ZnF_C2H2: domain 8 of 10, from 352 to 374: score 30.5, E = 0.00023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+ +++ +H+r+H   
   mKIAA1874   352    YECNE-CGKTFSRSsNFAKHQRIH    374  

ZnF_C2H2: domain 9 of 10, from 380 to 402: score 28.6, E = 0.00088
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgk f + +aL++H+r+H   
   mKIAA1874   380    YKCGE-CGKAFVHSsALIQHQRTH    402  

ZnF_C2H2: domain 10 of 10, from 408 to 430: score 33.7, E = 2.5e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksf+s ++L+rH+r+H   
   mKIAA1874   408    FRCTE-CGKSFKSSpSLIRHQRTH    430  

	[output cut off at A = 10 top alignments]
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