hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02924/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1874  ( 435 res)   mbg02924

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         296.9    2.4e-85  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/10    157   179 ..     1    24 []    29.9  5.9e-05
zf-C2H2    2/10    185   207 ..     1    24 []    39.9  5.6e-08
zf-C2H2    3/10    212   234 ..     1    24 []    31.6  1.9e-05
zf-C2H2    4/10    240   262 ..     1    24 []    32.7  8.3e-06
zf-C2H2    5/10    268   290 ..     1    24 []    36.9  4.6e-07
zf-C2H2    6/10    296   318 ..     1    24 []    36.0  8.8e-07
zf-C2H2    7/10    324   346 ..     1    24 []    37.4  3.3e-07
zf-C2H2    8/10    352   374 ..     1    24 []    40.6  3.6e-08
zf-C2H2    9/10    380   402 ..     1    24 []    37.6  2.8e-07
zf-C2H2   10/10    408   430 ..     1    24 []    37.3  3.4e-07

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 10, from 157 to 179: score 29.9, E = 5.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cg+ F+ +s L rH+r+H   
   mKIAA1874   157    HKCD-ECGELFTYRSVLIRHQRVH    179  

zf-C2H2: domain 2 of 10, from 185 to 207: score 39.9, E = 5.6e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +CgksFs+++nL++H+rtH   
   mKIAA1874   185    YTCS-ECGKSFSHRANLTKHQRTH    207  

zf-C2H2: domain 3 of 10, from 212 to 234: score 31.6, E = 1.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F  +s+L+ H+r+H   
   mKIAA1874   212    FECG-ECKKTFIESSSLEVHQRIH    234  

zf-C2H2: domain 4 of 10, from 240 to 262: score 32.7, E = 8.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk F+r+ +L +H+ +H   
   mKIAA1874   240    YECA-ECGKGFNRSTHLAQHQLIH    262  

zf-C2H2: domain 5 of 10, from 268 to 290: score 36.9, E = 4.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k+F ++s L +H+rtH   
   mKIAA1874   268    YECN-ECDKAFIHSSALIKHQRTH    290  

zf-C2H2: domain 6 of 10, from 296 to 318: score 36.0, E = 8.8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dCgk+Fs+ s+L++H+r+H   
   mKIAA1874   296    YKCQ-DCGKAFSHCSSLTKHQRVH    318  

zf-C2H2: domain 7 of 10, from 324 to 346: score 37.4, E = 3.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++ +L +H+r+H   
   mKIAA1874   324    YECS-ECGKTFSQSTHLVQHQRIH    346  

zf-C2H2: domain 8 of 10, from 352 to 374: score 40.6, E = 3.6e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fsr+sn+ +H+r+H   
   mKIAA1874   352    YECN-ECGKTFSRSSNFAKHQRIH    374  

zf-C2H2: domain 9 of 10, from 380 to 402: score 37.6, E = 2.8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +Cgk+F ++s L +H+rtH   
   mKIAA1874   380    YKCG-ECGKAFVHSSALIQHQRTH    402  

zf-C2H2: domain 10 of 10, from 408 to 430: score 37.3, E = 3.4e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +CgksF+++ +L rH+rtH   
   mKIAA1874   408    FRCT-ECGKSFKSSPSLIRHQRTH    430  

//