hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02296/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1873  ( 859 res)   mph02296

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C1Q      Complement component C1q domain.               133.0    3.3e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1Q        1/1     723   859 .]     1   146 []   133.0  3.3e-35

Alignments of top-scoring domains:
C1Q: domain 1 of 1, from 723 to 859: score 133.0, E = 3.3e-35
                   *->eykakprsAFsvilsyterpPpEmNpgqpirFdkvLyNqqghYdpsT
                        +++ r+AFs+ ++ ++  P+    +qpi+Fd +L N ++ +d + 
   mKIAA1873   723    PLPQQMRVAFSAART-SNLAPG--TLDQPIVFDLLLNNLGETFDLQL 766  

                   GkFtCpvPGvYyFsYhievkgrRqnvkvsLmkngiqvlrvvstydeyqkg
                   G+F+Cpv G Y+F +h  + +   ++ v+Lmkn + vl  vs+y+++   
   mKIAA1873   767 GRFNCPVNGTYVFIFHMLKLAVNVPLYVNLMKN-EEVL--VSAYANDGAP 813  

                   lydvaSGgalLqLeqGDqVWLelddeeknglyageevdSvFSGFLLfpd<
                   + + aS+ a+LqL qGDq WL+l +   + +y++++++S+FSG+LL+ d 
   mKIAA1873   814 DHETASNHAVLQLLQGDQIWLRLHR---GAIYGSSWKYSTFSGYLLYQD  859  

                   -*
                     
   mKIAA1873     -    -    

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