hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02296/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1873  ( 859 res)   mph02296

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
C1q        C1q domain                                   169.9    4.2e-47   1
Keratin_B2 Keratin, high sulfur B2 protein              -74.6       0.69   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Keratin_B2   1/1     366   493 ..     1   177 []   -74.6     0.69
C1q          1/1     731   856 ..     1   137 []   169.9  4.2e-47

Alignments of top-scoring domains:
Keratin_B2: domain 1 of 1, from 366 to 493: score -74.6, E = 0.69
                   *->qtScCGfptCStlgtrPsCGsscCQPsCCeSCCQpsCcqpSCCqPtc
                           G+  +   +     + ++ +P    S+  ps   pS C P  
   mKIAA1873   366    -----GTYNFMQES-----VLDFDKP----SSAIPSSQPPSAC-P-V 396  

                   sqtscCqPtcfqs....sCCrPsCcqTSCCqPtCcqsssCqtgCgigGsi
                   s+ s  q ++ qs+  +   + s+        tC  + ++ t+ + +   
   mKIAA1873   397 STVSAEQNLSNQSdflqEPSQASSPV------TCSSNACLVTTDQAS--- 437  

                   GyGQeGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqpvsaQa
                          SG           +  + +t+  p  vvs ++P   +p sa a
   mKIAA1873   438 -------SG-----------SETEFTTSETPEMVVSPCKP---KPASALA 466  

                   sCCRPsCqPyCgqsCCRPaCccsvtCtrTccePc<-*
                   s   P  + + +     P  ++s      ++ P    
   mKIAA1873   467 SPNPPLSKSFQL-----PPASGS--SEAISTAPF    493  

C1q: domain 1 of 1, from 731 to 856: score 169.9, E = 4.2e-47
                   *->AFSAglttnlpppnasgpisetpvvFdkvltNigghYdpaTGkFtCp
                      AFSA++t+nl p+ + ++    p+vFd  l N+g+ +d   G+F+Cp
   mKIAA1873   731    AFSAARTSNLAPG-TLDQ----PIVFDLLLNNLGETFDLQLGRFNCP 772  

                   vpGvYyFsfhvtskgvkrknlkvsLmkNgqpvvsvydqaqdgskldvaSg
                   v G Y+F fh+  k + +  l+v+LmkN ++ vs+y++++  + +++aS+
   mKIAA1873   773 VNGTYVFIFHML-KLAVNVPLYVNLMKNEEVLVSAYANDGAPD-HETASN 820  

                   svvLqLekGDeVWLrldggernglysdggdtdStFSGFLL<-*
                   ++vLqL +GD++WLrl+    +g+++++++++StFSG+LL   
   mKIAA1873   821 HAVLQLLQGDQIWLRLH----RGAIYGSSWKYSTFSGYLL    856  

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