hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj02754/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1870  ( 857 res)   mtj02754

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
COLFI    Fibrillar collagens C-terminal domain          149.7      3e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
COLFI      1/1     656   857 .]     1   240 []   149.7    3e-40

Alignments of top-scoring domains:
COLFI: domain 1 of 1, from 656 to 857: score 149.7, E = 3e-40
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                        eif +L  l+n    I+++k+P+G+k nPAR C+DL  c ++  d
   mKIAA1870   656    GGEIFKTLHYLSN---LIQSIKTPLGTKENPARVCRDLMDCEQRMAD 699  

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWysgkskd
                   G+YWvDPN+GC+ D i+V Cnf+ G g+TC +p                 
   mKIAA1870   700 GTYWVDPNLGCSSDTIEVSCNFTQG-GQTCLKP----------------- 731  

                   kkhvWFgetmngGfkFsYgdsegspvgvvQLTFLRLLSteAsQniTYhCK
                            +   +k +   s+      vQ++FL LLS+e++Q iT hC 
   mKIAA1870   732 ---------IT-ASKAEFAVSR------VQMNFLHLLSSEGTQHITIHCL 765  

                   NSvAYmDeatGNlk.kAlilrgsnDvElsaegnskftYeVLe.DGCqkrt
                   N   ++     + +++A+++r  n     a g +++ +     DGC+ + 
   mKIAA1870   766 NMTVWQEGPGRSSArQAVRFRAWNGQVFEAGGQFRPEV---SmDGCKVHD 812  

                   gkwgKTViEyrTkkteRLPIv...DiAPsDIGGadQeFGveiGPVCFs<-
                   g w +T + +rT+ + +LPIv+ + + P+  G + +   +e+GP+CF+  
   mKIAA1870   813 GRWHQTLFTFRTQDPQQLPIVsvdNLPPVSSGKQYR---LEVGPACFL   857  

                   *
                    
   mKIAA1870     -   -    

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