hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07308/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1867  ( 172 res)   mbg07308

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
V-set    Immunoglobulin V-set domain                     30.5    3.9e-05   1
ig       Immunoglobulin domain                           25.1     0.0016   1
I-set    Immunoglobulin I-set domain                      4.7     0.0051   1
C1-set   Immunoglobulin C1-set domain                   -10.4       0.35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/1      24    91 ..     1    65 []    25.1   0.0016
C1-set     1/1      16   102 ..     1    92 []   -10.4     0.35
V-set      1/1      10   106 ..     1   130 []    30.5  3.9e-05
I-set      1/1      10   108 ..     1    97 []     4.7   0.0051

Alignments of top-scoring domains:
ig: domain 1 of 1, from 24 to 91: score 25.1, E = 0.0016
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G++vtL C        d  v W ++g  l+ g +        +s++q
   mKIAA1867    24    GQPVTLLCAI---PEYDGFVLWIKDGLaLGvGRDL-------SSYPQ 60   

                   t...........sLtitnvtpeDggtYtCvv<-*
                   +   +++ +++++L i++++ +D+++Y C++   
   mKIAA1867    61 YlvvgnhlsgehHLKILRAELQDDAVYECQA    91   

C1-set: domain 1 of 1, from 16 to 102: score -10.4, E = 0.35
                   *->ppgspepel.gkpntLvClVtgFyPpdItVtWlkNGqevtegveste
                      p  + +   +g+p+tL C +  +   d  V W k+G  +  g   ++
   mKIAA1867    16    PQ-DQV-VVsGQPVTLLCAIPEY---DGFVLWIKDGLALGVGRDLSS 57   

                   plpkn..gDgtYqlsSyLtftasepesgdsYtCrVeHesLkvenePlt<-
                   +++     +++ +  ++L + ++e ++  +Y C+   ++ +  + P    
   mKIAA1867    58 YPQ-YlvVGNHLSGEHHLKILRAELQDDAVYECQAIQAAIR--SRPAR   102  

                   *
                    
   mKIAA1867     -   -    

V-set: domain 1 of 1, from 10 to 106: score 30.5, E = 3.9e-05
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                       s  +q  p             +v+ G+ vtL C            +
   mKIAA1867    10    YSFSQQ--PQ----------DQVVVSGQPVTLLCAIP---------E 35   

                   gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg
                    +g v W +++  +G + +l +       +++  +  v++ ++g  +   
   mKIAA1867    36 YDGFVLWIKDgLALGVGRDLSS-------YPQ--YLVVGNHLSGEHH--- 73   

                   npskgdfsLtIsnlqlsDsGtYyCa.......gggtrLtVl<-*
                           L+I +++l D ++Y C+      +    rLtVl   
   mKIAA1867    74 --------LKILRAELQDDAVYECQaiqaairSRPARLTVL    106  

I-set: domain 1 of 1, from 10 to 108: score 4.7, E = 0.0051
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssv...
                       +F+q+p+d++V  G+++++ C +  + +  V W KdG  l  v+++
   mKIAA1867    10    YSFSQQPQDQVVVSGQPVTLLCAIPEY-DGFVLWIKDGLALG-Vgrd 54   

                   .l.lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeas
                    ++ p   + v+ ++ sg++ L+I++++  D  +Y C+A      +  a+
   mKIAA1867    55 lSsYP--QYLVVGNHLSGEHHLKILRAELQDDAVYECQAIQAaIRSRPAR 102  

                   aeLtVq<-*
                    ++ V    
   mKIAA1867   103 LTVLVP    108  

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