hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00284/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1858  ( 597 res)   mbh00284

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     55.9      5e-12   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/3       1    23 [.     1    23 []    21.1     0.15
ZnF_C2H2   2/3      29    52 ..     1    23 []    18.2      1.2
ZnF_C2H2   3/3      82   104 ..     1    23 []    25.4   0.0078

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 3, from 1 to 23: score 21.1, E = 0.15
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ Cgk+f+ +  L+rH+ vH   
   mKIAA1858     1    RDCHH-CGKQFPKPfKLQRHLAVH    23   

ZnF_C2H2: domain 2 of 3, from 29 to 52: score 18.2, E = 1.2
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y Cp  C+++++ + +Lk H+  +H   
   mKIAA1858    29    YLCPR-CPQVYPEPwELKVHLGlTH    52   

ZnF_C2H2: domain 3 of 3, from 82 to 104: score 25.4, E = 0.0078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  C+++f  k+++ rHm +H   
   mKIAA1858    82    FVCSS-CNYTFAKKeQFDRHMGKH    104  

//