hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00284/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1858  ( 597 res)   mbh00284

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          50.0    5.4e-11   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/3       1    23 [.     1    24 []    17.9     0.24
zf-C2H2    2/3      29    52 ..     1    24 []    14.2      3.2
zf-C2H2    3/3      82   104 ..     1    24 []    24.0   0.0034

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 3, from 1 to 23: score 17.9, E = 0.24
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cgk F  +  L+rHl +H   
   mKIAA1858     1    RDCH-HCGKQFPKPFKLQRHLAVH    23   

zf-C2H2: domain 2 of 3, from 29 to 52: score 14.2, E = 3.2
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y Cp  C +++  + +Lk Hl  +H   
   mKIAA1858    29    YLCP-RCPQVYPEPWELKVHLGLtH    52   

zf-C2H2: domain 3 of 3, from 82 to 104: score 24.0, E = 0.0034
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C+++F  k+++ rH+ +H   
   mKIAA1858    82    FVCS-SCNYTFAKKEQFDRHMGKH    104  

//