hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00441/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1856  ( 1062 res)   mpg00441

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAH      Bromo adjacent homology domain                  53.4    2.9e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAH        1/1     911  1056 ..     1   163 []    53.4  2.9e-11

Alignments of top-scoring domains:
BAH: domain 1 of 1, from 911 to 1056: score 53.4, E = 2.9e-11
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                      e+i++GD+  + ++              ++ +y++rI++++e ++++
   mKIAA1856   911    EMIRIGDCAVFLSAG------------RPNLPYIGRIQSMWESWGNN 945  

                   kskkvrvrwfyRPedtvlgkarllerepr.................l.kd
                       vrv wfy+Pe+t+ gk   +   ++ +++++++ +   + ++++k 
   mKIAA1856   946 --MVVRVKWFYHPEETSPGKQ--FHEGQHwdqksghslpaalrassQrK- 990  

                   yafdknEvflsecPceddvpledIigkCnVlklsdyeklrpeesnsdakl
                     f+++ ++ s++   d+++++++ +kC V  l++ye    +++      
   mKIAA1856   991 -DFMERALYQSSH--VDENDVQTVSHKCLVVGLEQYEQMLKTKKY----- 1032 

                   erakaEERKkkgeedvFfcellYdptkgsFkklp<-*
                              + e  ++    Y+pt+g  ++ +   
   mKIAA1856  1033 ----------QDSEGLYYLAGTYEPTTGMIFSTD    1056 

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