hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00441/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1856  ( 1062 res)   mpg00441

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAH      BAH domain                                      24.9     0.0019   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAH        1/1     911  1056 ..     1   158 []    24.9   0.0019

Alignments of top-scoring domains:
BAH: domain 1 of 1, from 911 to 1056: score 24.9, E = 0.0019
                   *->etysvGDfVlvepddpknleetKagrnvalepyyvarIeeivelfed
                      e++++GD+ +++++               ++ +y++rI+++   +e+
   mKIAA1856   911    EMIRIGDCAVFLSAG-------------RPNLPYIGRIQSM---WES 941  

                   sdgskskmlhvrwf........................yRPeetPyiksl
                     ++    ++v wf ++++++++++ +++++ ++++++  P    +  s 
   mKIAA1856   942 WGNN--MVVRVKWFyhpeetspgkqfhegqhwdqksghSLPAAL-RASSQ 988  

                   grafnkDirEVflsdecddvplediigkCeVlkksdpeslqpeeinidAd
                   ++ f +  r ++ s + d+++++++  kC V+ + ++e    ++      
   mKIAA1856   989 RKDFME--RALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKTK------ 1030 

                   kldrarAERKkkgeedvFfCellYdpekgsFkklp<-*
                            K  + e  ++    Y+p++g  ++     
   mKIAA1856  1031 ---------KYQDSEGLYYLAGTYEPTTGMIFSTD    1056 

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