hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej02019/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1852  ( 736 res)   mej02019

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    275.0    5.7e-78  15
KRAB     krueppel associated box                        145.0      8e-39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1       5    65 ..     1    62 []   145.0    8e-39
ZnF_C2H2   1/15    233   255 ..     1    23 []     0.6  2.7e+02
ZnF_C2H2   2/15    345   367 ..     1    23 []     7.7       43
ZnF_C2H2   3/15    373   395 ..     1    23 []    32.7  5.1e-05
ZnF_C2H2   4/15    401   423 ..     1    23 []    26.8    0.003
ZnF_C2H2   5/15    429   451 ..     1    23 []    28.5   0.0009
ZnF_C2H2   6/15    457   479 ..     1    23 []    31.4  0.00013
ZnF_C2H2   7/15    485   507 ..     1    23 []    27.8   0.0015
ZnF_C2H2   8/15    513   535 ..     1    23 []    30.6  0.00021
ZnF_C2H2   9/15    541   563 ..     1    23 []    26.3   0.0043
ZnF_C2H2  10/15    569   591 ..     1    23 []    26.6   0.0033
ZnF_C2H2  11/15    597   619 ..     1    23 []    25.5   0.0076
ZnF_C2H2  12/15    625   647 ..     1    23 []    21.8    0.094
ZnF_C2H2  13/15    653   675 ..     1    23 []    28.2   0.0011
ZnF_C2H2  14/15    681   703 ..     1    23 []    23.2    0.036
ZnF_C2H2  15/15    709   731 ..     1    23 []    26.0   0.0052

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 5 to 65: score 145.0, E = 8e-39
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF+DVAV F+qEEW+qLD  Qr+LYRdVMlE+Y++L S+G  q++k
   mKIAA1852     5    VTFKDVAVAFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVG-NQIAK 50   

                   pdliskLEqgeEpwi<-*
                   p++is+LEqgeEpw+   
   mKIAA1852    51 PEVISLLEQGEEPWS    65   

ZnF_C2H2: domain 1 of 15, from 233 to 255: score 0.6, E = 2.7e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+    ksf++  ++  H  vH   
   mKIAA1852   233    FKCTD-AVKSFNHIiQFGDHKAVH    255  

ZnF_C2H2: domain 2 of 15, from 345 to 367: score 7.7, E = 43
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+ ++ Cg sf + + L++H ++H   
   mKIAA1852   345    YEFNK-CGTSFIWSsYLIQHKKTH    367  

ZnF_C2H2: domain 3 of 15, from 373 to 395: score 32.7, E = 5.1e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f++++aL++H r+H   
   mKIAA1852   373    YECDK-CGKVFRNRsALTKHERTH    395  

ZnF_C2H2: domain 4 of 15, from 401 to 423: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L+ H r+H   
   mKIAA1852   401    YECNK-CGKAFSWNsHLIVHTRIH    423  

ZnF_C2H2: domain 5 of 15, from 429 to 451: score 28.5, E = 0.0009
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksf++ ++L+ H+r+H   
   mKIAA1852   429    YVCNE-CGKSFNWNsHLIGHQRTH    451  

ZnF_C2H2: domain 6 of 15, from 457 to 479: score 31.4, E = 0.00013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksfs+ ++L+ Hmr+H   
   mKIAA1852   457    FECTE-CGKSFSWSsHLIAHMRMH    479  

ZnF_C2H2: domain 7 of 15, from 485 to 507: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C k f++++aL +H r+H   
   mKIAA1852   485    FKCDE-CEKAFRDYsALSKHERTH    507  

ZnF_C2H2: domain 8 of 15, from 513 to 535: score 30.6, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgksfs+ ++L+ H+r+H   
   mKIAA1852   513    YKCTE-CGKSFSWSsHLIAHQRTH    535  

ZnF_C2H2: domain 9 of 15, from 541 to 563: score 26.3, E = 0.0043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+ ++aL++H  +H   
   mKIAA1852   541    YNCQE-CGKAFRERsALTKHEIIH    563  

	[output cut off at A = 10 top alignments]
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