hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02019/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1852  ( 736 res)   mej02019

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         355.6   5.3e-103  15
KRAB     KRAB box                                        98.7    1.2e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1       5    45 ..     1    41 []    98.7  1.2e-25
zf-C2H2    1/15    233   255 ..     1    24 []     0.8       82
zf-C2H2    2/15    345   367 ..     1    24 []    13.9      3.8
zf-C2H2    3/15    373   395 ..     1    24 []    38.6  1.4e-07
zf-C2H2    4/15    401   423 ..     1    24 []    34.6  2.3e-06
zf-C2H2    5/15    429   451 ..     1    24 []    36.1  7.8e-07
zf-C2H2    6/15    457   479 ..     1    24 []    38.0  2.1e-07
zf-C2H2    7/15    485   507 ..     1    24 []    32.3  1.1e-05
zf-C2H2    8/15    513   535 ..     1    24 []    39.0    1e-07
zf-C2H2    9/15    541   563 ..     1    24 []    31.4  2.1e-05
zf-C2H2   10/15    569   591 ..     1    24 []    33.7  4.3e-06
zf-C2H2   11/15    597   619 ..     1    24 []    32.0  1.3e-05
zf-C2H2   12/15    625   647 ..     1    24 []    23.4   0.0053
zf-C2H2   13/15    653   675 ..     1    24 []    33.9  3.6e-06
zf-C2H2   14/15    681   703 ..     1    24 []    29.5  7.6e-05
zf-C2H2   15/15    709   731 ..     1    24 []    29.5  7.6e-05

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 5 to 45: score 98.7, E = 1.2e-25
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtF+DVAV FtqEEWg+Ld  Qr+LYrdVMlE+y++L+S+g   
   mKIAA1852     5    VTFKDVAVAFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVG    45   

zf-C2H2: domain 1 of 15, from 233 to 255: score 0.8, E = 82
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ d  ksF++  ++  H+ +H   
   mKIAA1852   233    FKCT-DAVKSFNHIIQFGDHKAVH    255  

zf-C2H2: domain 2 of 15, from 345 to 367: score 13.9, E = 3.8
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+ + +Cg+sF  +s L +H++tH   
   mKIAA1852   345    YEFN-KCGTSFIWSSYLIQHKKTH    367  

zf-C2H2: domain 3 of 15, from 373 to 395: score 38.6, E = 1.4e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+++s L++H rtH   
   mKIAA1852   373    YECD-KCGKVFRNRSALTKHERTH    395  

zf-C2H2: domain 4 of 15, from 401 to 423: score 34.6, E = 2.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs +s+L  H r+H   
   mKIAA1852   401    YECN-KCGKAFSWNSHLIVHTRIH    423  

zf-C2H2: domain 5 of 15, from 429 to 451: score 36.1, E = 7.8e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +CgksF+ +s+L  H+rtH   
   mKIAA1852   429    YVCN-ECGKSFNWNSHLIGHQRTH    451  

zf-C2H2: domain 6 of 15, from 457 to 479: score 38.0, E = 2.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +CgksFs +s+L +H+r+H   
   mKIAA1852   457    FECT-ECGKSFSWSSHLIAHMRMH    479  

zf-C2H2: domain 7 of 15, from 485 to 507: score 32.3, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C k+F++ s L +H rtH   
   mKIAA1852   485    FKCD-ECEKAFRDYSALSKHERTH    507  

zf-C2H2: domain 8 of 15, from 513 to 535: score 39.0, E = 1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +CgksFs +s+L +H+rtH   
   mKIAA1852   513    YKCT-ECGKSFSWSSHLIAHQRTH    535  

zf-C2H2: domain 9 of 15, from 541 to 563: score 31.4, E = 2.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cgk+F+ +s L++H  +H   
   mKIAA1852   541    YNCQ-ECGKAFRERSALTKHEIIH    563  

zf-C2H2: domain 10 of 15, from 569 to 591: score 33.7, E = 4.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgks+s+ ++L rH+rtH   
   mKIAA1852   569    YECN-KCGKSCSQMAHLVRHQRTH    591  

zf-C2H2: domain 11 of 15, from 597 to 619: score 32.0, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +CgksFs++ +L +H+r+H   
   mKIAA1852   597    YECN-KCGKSFSQSCHLVAHRRIH    619  

zf-C2H2: domain 12 of 15, from 625 to 647: score 23.4, E = 0.0053
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C +sF+ +s+L +H+rtH   
   mKIAA1852   625    YKCN-QCERSFNCSSHLIAHRRTH    647  

zf-C2H2: domain 13 of 15, from 653 to 675: score 33.9, E = 3.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ +s+L  Hlr H   
   mKIAA1852   653    YRCN-ECGKAFNESSSLIVHLRNH    675  

zf-C2H2: domain 14 of 15, from 681 to 703: score 29.5, E = 7.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C k+F+ +s+L  H+r+H   
   mKIAA1852   681    YKCN-HCEKAFCKNSSLIIHQRMH    703  

zf-C2H2: domain 15 of 15, from 709 to 731: score 29.5, E = 7.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg++Fs +s L +H++ H   
   mKIAA1852   709    FICN-QCGRAFSGHSALLQHQKNH    731  

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