hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00887/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1851  ( 705 res)   mpg00887

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    56.8    2.9e-12   6
IG       Immunoglobulin                                  37.5    1.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_TYP    1/6     262   280 ..     1    24 []     5.8       82
LRR_TYP    2/6     281   304 ..     1    24 []    24.2    0.018
LRR_TYP    3/6     306   328 ..     1    24 []     9.0       33
LRR_TYP    4/6     329   352 ..     1    24 []    18.7     0.85
LRR_TYP    5/6     353   373 ..     1    24 []     7.8       46
LRR_TYP    6/6     379   403 ..     1    24 []    14.8      6.4
IG         1/1     482   569 ..     1    58 []    37.5  1.8e-06

Alignments of top-scoring domains:
LRR_TYP: domain 1 of 6, from 262 to 280: score 5.8, E = 82
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                           eLdLs+N+L++L+pg +++   
   mKIAA1851   262    -----ELDLSHNALKRLHPGWLAP    280  

LRR_TYP: domain 2 of 6, from 281 to 304: score 24.2, E = 0.018
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ Lr L+L++N+L+ L +gaF +   
   mKIAA1851   281    LSRLRALHLGYNKLEVLGHGAFTN    304  

LRR_TYP: domain 3 of 6, from 306 to 328: score 9.0, E = 33
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       + Lr+LdLs+N L+ L+   ++g   
   mKIAA1851   306    -SGLRTLDLSSNMLRMLHTHDLDG    328  

LRR_TYP: domain 4 of 6, from 329 to 352: score 18.7, E = 0.85
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++L L nN L +L  +aFqg   
   mKIAA1851   329    LEELEKLLLFNNSLMHLDLDAFQG    352  

LRR_TYP: domain 5 of 6, from 353 to 373: score 7.8, E = 46
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L +L+Ls N L+s     F++   
   mKIAA1851   353    LRMLSHLYLSCNELSSFS---FNH    373  

LRR_TYP: domain 6 of 6, from 379 to 403: score 14.8, E = 6.4
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                      L+ Lr+LdLs+N L+++  p++ +    
   mKIAA1851   379    LTRLRTLDLSSNWLKHISiPELAAL    403  

IG: domain 1 of 1, from 482 to 569: score 37.5, E = 1.8e-06
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       +++ +++G+s++L C+ s + +++ W ++++     + +++++   
   mKIAA1851   482    EEqLHAQVGQSLRLFCnTSvpatRVAWVspknellvapasqdgsiav 528  

                   .....LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-*
                     +++L I++v+++++   G+++C a++++ +++++   + +++V+   
   mKIAA1851   529 ladgsLAIgRVQEQHA---GVFVCLASgprlHHNQTL--EYNVSVQ    569  

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